Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parus_20major_20[refseq_20GCF_5F001522545.2_202016-06-30] 1,675 sequences; 1,020,310,768 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq17 96.9 3e-15 >seq17 Length=13820886 Score = 96.9 bits (106), Expect = 3e-15 Identities = 152/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 24993 GGAACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAG 25052 |||| |||||| || || || ||||| |||| || || ||||||| | || |||||| Sbjct 1693477 GGAAAAATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTTGAGGTGGAG 1693536 Query 25053 TCGTCTGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCT 25112 | |||||| || ||| | ||| || ||| ||||| ||||| || || ||| Sbjct 1693537 CCCAGTGACACCATTGAGAATGTCAAGGCCAAGATCCAAGACAAGGAAGGCATCCCTCCT 1693596 Query 25113 GACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGAT 25172 || || ||| || | ||||| || || || || | ||||||| || || || || Sbjct 1693597 GATCAGCAGAGGCTGATTTTCGCTGGGAAGCAGCTGGAAGATGGCCGTACCCTGTCTGAC 1693656 Query 25173 TACAATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 ||||| || || ||||||||||| || || | ||||| Sbjct 1693657 TACAACATCCAGAAAGAATCCACTCTGCACCTGGTGCT 1693694 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433319154015125