Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parus_20major_20[refseq_20GCF_5F001522545.2_202016-06-30] 1,675 sequences; 1,020,310,768 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq1 152 1e-31 seq2 93.3 8e-14 seq3 84.2 4e-11 >seq1 Length=114059860 Score = 152 bits (168), Expect = 1e-31 Identities = 180/237 (76%), Gaps = 5/237 (2%) Strand=Plus/Plus Query 244318 CAGCCCCTTGCTGACGGGGCTGCCCTCGTAGGTCGGGTAGGGACCGT-CGCGCTGGGCCA 244376 || |||||||||||| || |||||||||||| ||||| |||| | | || ||||| Sbjct 22252 CACCCCCTTGCTGACCGGAGAGCCCTCGTAGGTGTCATAGGGGCCGTGCTCCCT-GGCCA 22310 Query 244377 GCTTACAGCTCTCGTCGAGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTTGTTCATGT 244436 ||| |||||| | || ||||| ||||||| |||||||||||||| || ||| | | Sbjct 22311 GCTCACAGCTGGCCTCCAGGGCCCCGTAGTAAATGGTCTCGAAGATGTGCTGGTTGA-GG 22369 Query 244437 CGC-GGGCCTTGCCGCAGGTGAAGGGGATGCCCATCATCATGAAGACGTCGGCCAGTCCC 244495 ||| | |||| | ||| |||||||| | ||| | |||||| |||| ||||| ||| Sbjct 22370 CGCTGAGCCTCGGCGCTCTCGAAGGGGAACCTCATGAGGATGAAGGCGTCAGCCAGGCCC 22429 Query 244496 TGCACGCCGATGCCGATGGGTCTGTGTCGCTTGTTGGAGCGCATGG-CTTCGGGCAC 244551 |||||||||||||||||||| | ||| || |||||||||| || || |||| || Sbjct 22430 TGCACGCCGATGCCGATGGGGCGGTGCCGGCGGTTGGAGCGCTCGGCCTGCGGGGAC 22486 Score = 149 bits (164), Expect = 1e-30 Identities = 157/207 (76%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 244704 CCACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGAGGTTACTGCACTTGATGG 244763 ||||||||||| | ||||||||| || ||||||||||| ||||| ||||||||||||| Sbjct 23989 CCACCTCCTCCTTGCTGGTGTACTCCACGATCTCGGTGCACAGGTTGCTGCACTTGATGG 24048 Query 244764 TGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCTTGTAGAGCATGAAGGGCC 244823 ||||||||| ||| || ||| ||| |||||||| |||||||||||||||| |||| Sbjct 24049 TGCCCAGGTTCTGCTGGTTGCTCTTCCTGTTGCAGGAGTCCTTGTAGAGCATGTAGGGGG 24108 Query 244824 CCCCGGTCTCGAGCTGGGCGACGAGGACGCTGTTCCAGAGGTCCCTAGCCTTGACCGTCC 244883 || |||||| ||||| ||| || | || |||||| | | ||||| ||| || Sbjct 24109 TGCCAGTCTCGGTCTGGGACTCGATGATGGCGTACCAGAGCTGCTGGGCCTTCACCACCC 24168 Query 244884 TGCGAGCCTTGCCCTCTGCCTCGTAGC 244910 |||| | ||||| |||||||| Sbjct 24169 TGCGCACGCGGCCCTGCCGCTCGTAGC 24195 Score = 104 bits (114), Expect = 4e-17 Identities = 98/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 245008 CTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGAGGTCCCTGGTCCTCTGCTCGTC 245067 || ||||||||| || ||||||||||| || ||| |||||||||| | |||||| || Sbjct 25238 CTTCATGAAGAGATCAGGGATCCAGAGCGCAAAGAACAGGTCCCTGGCTCGCTGCTCTTC 25297 Query 245068 CGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGACGTCGACGTGCCAGGGCTCCAT 245127 |||||||||||| ||| |||| || ||||||| ||| | |||||| ||||||| Sbjct 25298 TTTCCCAGTGTTCTTCTTCAAGTCCAGGAACTCAAAGATGTCCAAGTGCCACGGCTCCAG 25357 Query 245128 GTAGA 245132 ||||| Sbjct 25358 GTAGA 25362 >seq2 Length=150265477 Score = 93.3 bits (102), Expect = 8e-14 Identities = 102/136 (75%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 42696 GGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCC 42755 || ||||| |||| |||||| | || || || ||||||||||| ||||| |||| || Sbjct 130841145 GGTGAGAGAGTGGTTGCCTTTGCTGCAGTGGAAGGCATCTTCTTTTCGGGTTCCTTTGCT 130841086 Query 42756 TCCATCTTCTGGCTCAAGCAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTC 42815 | || || ||||| ||| ||| || | |||||| ||| | || ||||| || ||||| Sbjct 130841085 GCTATATTTTGGCTGAAGAAGAGGGGCTTGATGCCTGGATTGACTTTCTCCAATGAACTT 130841026 Query 42816 ATCAGCAGGGACGAGG 42831 || ||||| || |||| Sbjct 130841025 ATTAGCAGAGATGAGG 130841010 >seq3 Length=111636321 Score = 84.2 bits (92), Expect = 4e-11 Identities = 93/124 (75%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 42708 GTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGG 42767 ||||||||| | || || || |||||||||||||| ||| | || || || || || ||| Sbjct 98374532 GTAGCCTTTGCAGCAGTGGAAGGCATCTTCTTCTCTGGCTCTTTTGCATCAATTTTTTGG 98374591 Query 42768 CTCAAGCAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGAC 42827 || ||| | | | | ||||| |||||||| || || || || |||||||| || || Sbjct 98374592 CTGAAGAAAAGAGGATTAATGCCTGGACTCACTTTTTCTAATGAGCTCATCAGTAGAGAT 98374651 Query 42828 GAGG 42831 |||| Sbjct 98374652 GAGG 98374655 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944319427898000