Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Parus_20major_20[refseq_20GCF_5F001522545.2_202016-06-30]
1,675 sequences; 1,020,310,768 total letters
Query= NC_009898.1
Length=368683
Score E
Sequences producing significant alignments: (Bits) Value
seq17 111 4e-19
seq20 95.1 3e-14
seq30 84.2 5e-11
>seq17
Length=13820886
Score = 111 bits (122), Expect = 4e-19
Identities = 139/191 (73%), Gaps = 0/191 (0%)
Strand=Plus/Minus
Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342
|| || ||||| || ||||| | || || || || ||||| | || || || || |||
Sbjct 1694129 TCCTTCTGGATGTTGTAGTCAGACAGGGTACGGCCATCTTCCAGCTGCTTGCCAGCAAAG 1694070
Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402
||||| | ||| || | ||||| ||||| ||||||||||| || || || |||||
Sbjct 1694069 ATCAGCCTCTGCTGGTCAGGAGGGATGCCTTCCTTATCCTGGATCTTGGCCTTGACGTTC 1694010
Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462
|| || | || || | || ||||| || ||||| ||||| || ||||| ||||| ||
Sbjct 1694009 TCAATGGTGTCACTGGGCTCCACTTCCAGAGTGATAGTCTTGCCAGTCAGGGTCTTCACA 1693950
Query 288463 AATATCTGCAT 288473
|| ||||||||
Sbjct 1693949 AAGATCTGCAT 1693939
Score = 105 bits (116), Expect = 2e-17
Identities = 139/193 (72%), Gaps = 0/193 (0%)
Strand=Plus/Minus
Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341
||| || ||||| || ||||| | || || || || ||||| | || || || || ||
Sbjct 1693902 TTCCTTCTGGATGTTGTAGTCAGACAGGGTACGGCCATCTTCCAGCTGCTTGCCAGCAAA 1693843
Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401
|| || | ||| || | ||||| ||||| ||||||||||| || || || |||||
Sbjct 1693842 AATAAGCCTCTGCTGGTCAGGAGGGATGCCTTCCTTATCCTGGATCTTGGCCTTGACGTT 1693783
Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461
|| || | || || | || || || || ||||| ||||| || ||||| ||||||||
Sbjct 1693782 CTCAATGGTGTCACTGGGCTCGACCTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTGAC 1693723
Query 288462 GAATATCTGCATT 288474
|| |||||||||
Sbjct 1693722 AAAGATCTGCATT 1693710
>seq20
Length=9871655
Score = 95.1 bits (104), Expect = 3e-14
Identities = 104/137 (76%), Gaps = 6/137 (4%)
Strand=Plus/Minus
Query 288340 AAGATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTC 288396
|||||||| | ||| || |||||| || ||||| || |||||||| || || |||
Sbjct 6389881 AAGATCAGCCTCTGCTGG---TCTGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTC 6389825
Query 288397 ACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTC 288456
|||||||| |||| || || | || || || || ||||| ||||| || ||||| |||
Sbjct 6389824 ACGTTTTCAATAGTGTCACTGGGCTCAACCTCAAGGGTGATGGTCTTGCCAGTCAGGGTC 6389765
Query 288457 TTGACGAATATCTGCAT 288473
||||| || ||||||||
Sbjct 6389764 TTGACAAAGATCTGCAT 6389748
>seq30
Length=5101010
Score = 84.2 bits (92), Expect = 5e-11
Identities = 81/104 (78%), Gaps = 0/104 (0%)
Strand=Plus/Plus
Query 288370 CCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCG 288429
||||| || |||||||| || ||||||||||| || || | || | | || || |||
Sbjct 3819490 CCTTCCTTGTCCTGGATCTTGGCTTTCACGTTCTCGATGGTGTCATTGGGCTCCACCTCG 3819549
Query 288430 AGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
|| ||||| || || |||||||| ||||| ||||| ||||||||
Sbjct 3819550 AGGGTGATGGTTTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 3819593
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1179629083510650
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |