Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parus_20major_20[refseq_20GCF_5F001522545.2_202016-06-30] 1,675 sequences; 1,020,310,768 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq17 111 4e-19 seq20 95.1 3e-14 seq30 84.2 5e-11 >seq17 Length=13820886 Score = 111 bits (122), Expect = 4e-19 Identities = 139/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| || ||||| | || || || || ||||| | || || || || ||| Sbjct 1694129 TCCTTCTGGATGTTGTAGTCAGACAGGGTACGGCCATCTTCCAGCTGCTTGCCAGCAAAG 1694070 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 ||||| | ||| || | ||||| ||||| ||||||||||| || || || ||||| Sbjct 1694069 ATCAGCCTCTGCTGGTCAGGAGGGATGCCTTCCTTATCCTGGATCTTGGCCTTGACGTTC 1694010 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | || || | || ||||| || ||||| ||||| || ||||| ||||| || Sbjct 1694009 TCAATGGTGTCACTGGGCTCCACTTCCAGAGTGATAGTCTTGCCAGTCAGGGTCTTCACA 1693950 Query 288463 AATATCTGCAT 288473 || |||||||| Sbjct 1693949 AAGATCTGCAT 1693939 Score = 105 bits (116), Expect = 2e-17 Identities = 139/193 (72%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||| || ||||| || ||||| | || || || || ||||| | || || || || || Sbjct 1693902 TTCCTTCTGGATGTTGTAGTCAGACAGGGTACGGCCATCTTCCAGCTGCTTGCCAGCAAA 1693843 Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401 || || | ||| || | ||||| ||||| ||||||||||| || || || ||||| Sbjct 1693842 AATAAGCCTCTGCTGGTCAGGAGGGATGCCTTCCTTATCCTGGATCTTGGCCTTGACGTT 1693783 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 || || | || || | || || || || ||||| ||||| || ||||| |||||||| Sbjct 1693782 CTCAATGGTGTCACTGGGCTCGACCTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTGAC 1693723 Query 288462 GAATATCTGCATT 288474 || ||||||||| Sbjct 1693722 AAAGATCTGCATT 1693710 >seq20 Length=9871655 Score = 95.1 bits (104), Expect = 3e-14 Identities = 104/137 (76%), Gaps = 6/137 (4%) Strand=Plus/Minus Query 288340 AAGATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTC 288396 |||||||| | ||| || |||||| || ||||| || |||||||| || || ||| Sbjct 6389881 AAGATCAGCCTCTGCTGG---TCTGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTC 6389825 Query 288397 ACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTC 288456 |||||||| |||| || || | || || || || ||||| ||||| || ||||| ||| Sbjct 6389824 ACGTTTTCAATAGTGTCACTGGGCTCAACCTCAAGGGTGATGGTCTTGCCAGTCAGGGTC 6389765 Query 288457 TTGACGAATATCTGCAT 288473 ||||| || |||||||| Sbjct 6389764 TTGACAAAGATCTGCAT 6389748 >seq30 Length=5101010 Score = 84.2 bits (92), Expect = 5e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 288370 CCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCG 288429 ||||| || |||||||| || ||||||||||| || || | || | | || || ||| Sbjct 3819490 CCTTCCTTGTCCTGGATCTTGGCTTTCACGTTCTCGATGGTGTCATTGGGCTCCACCTCG 3819549 Query 288430 AGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || ||||| || || |||||||| ||||| ||||| |||||||| Sbjct 3819550 AGGGTGATGGTTTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 3819593 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179629083510650