Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parus_20major_20[refseq_20GCF_5F001522545.2_202016-06-30] 1,675 sequences; 1,020,310,768 total letters Query= NC_012783.2 Length=226205 Score E Sequences producing significant alignments: (Bits) Value seq10 167 3e-36 seq18 93.3 6e-14 >seq10 Length=31324166 Score = 167 bits (184), Expect = 3e-36 Identities = 217/300 (72%), Gaps = 0/300 (0%) Strand=Plus/Minus Query 8880 GGAACGCGGCCAACGGACATCCCTTCACATTGGCACAAATGAGGGACTGAATGGTTGCGG 8939 |||| || | || ||||| || ||||| ||| || ||||| ||| | || || | Sbjct 5769500 GGAAGGCAGTGAAGGGACAGCCTTTCACGTTGTTGCAGATGAGCTTCTGCAGGGAGGCTG 5769441 Query 8940 TTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGGG 8999 | || |||||||| || || || | || |||||||||||||| ||||||||| | |||| Sbjct 5769440 TGTTGACGATGTCAAAGCCCACCTTGCCCCCGAAGGTGCTGGGCTTCCAGTACTCAGGGG 5769381 Query 9000 AGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATGATGC 9059 |||||||| | || |||| ||||| |||| ||| || || ||||||| || | ||| Sbjct 5769380 AGCAGATGGCATTGCCCATCAGCCCCTTCAGGGAGAATGGTGCCCCCATTTCCACCATGG 5769321 Query 9060 TCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGTTCGA 9119 |||| || |||||||| ||||| || || || || || | | ||| | ||| || || | Sbjct 5769320 TCTCGCCAAAGATGGCCCCGGGCCGGGGCTTCTCCACCAGCAGGCCTGGGTACAGCTCCA 5769261 Query 9120 CAGCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCACCTACAA 9179 || || | ||| || ||||| | |||| ||| || || ||||| || || ||| ||| Sbjct 5769260 TGGCATCAATGTCCCCGTAGAGCTCCTCCAGCTCCGCTGCCATCTCTTTTTCTCCTGCAA 5769201 Score = 111 bits (122), Expect = 2e-19 Identities = 109/139 (78%), Gaps = 4/139 (3%) Strand=Plus/Minus Query 9553 TCAGGCAACAGAGAATGCCAGCGGTAGAGGGTATTGAACTCGGCCGCTATTCGGTTCTGG 9612 ||||||| ||| | |||||| |||| ||||| ||||| ||||| || || ||||||||| Sbjct 5768635 TCAGGCAGCAGTGGGTGCCAGTGGTACAGGGTGTTGAATTCGGCTGCAATGCGGTTCTGG 5768576 Query 9613 TACTGAAA--GGCGGTACCGAACAGTAACTCCGGGTCAAAGATTAGCTGGAAGTGGTACC 9670 ||||| || ||| |||||| | ||| |||||||| | |||| ||||||||||| Sbjct 5768575 TACTGGAACCTCTGGT--TGAACAGCAGCTCGGGGTCAAACTTCAGCTTGAAGTGGTACC 5768518 Query 9671 CGCTGAGTTGCTGGACATA 9689 |||| || ||||| ||||| Sbjct 5768517 CGCTCAGGTGCTGCACATA 5768499 >seq18 Length=10486032 Score = 93.3 bits (102), Expect = 6e-14 Identities = 198/296 (67%), Gaps = 0/296 (0%) Strand=Plus/Plus Query 8880 GGAACGCGGCCAACGGACATCCCTTCACATTGGCACAAATGAGGGACTGAATGGTTGCGG 8939 ||||||| | |||| || |||||||||| || | ||| || | || ||| | Sbjct 1683150 GGAACGCCACGTACGGGCACTTCTTCACATTGAGGCACACGAGCTTCTTGAGGGATGCCG 1683209 Query 8940 TTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGGG 8999 | || || || || || || | || || || ||||||||||||||||| | |||| Sbjct 1683210 TCTTAACAATCTCAAAGCCGGTTGCTCCACCAAATGTGCTGGGTTTCCAGTAGTCTGGGG 1683269 Query 9000 AGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATGATGC 9059 |||||||| || | | ||||| || | |||||| ||||| || | ||| | |||| Sbjct 1683270 AGCAGATGGGATTTCCAAAAAGCCCCTTTAGGGAAAATGGAGCTCCAATCTCCACCATGC 1683329 Query 9060 TCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGTTCGA 9119 | || || || ||| | ||| | ||||| |||| | ||||| ||| | || | Sbjct 1683330 TTTCCCCAAAAATGCCGTTGGGTTGGGGTTTCTCGAGCAGCAAGCCTAGGTAAAACTCCA 1683389 Query 9120 CAGCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCACCT 9175 ||| || | ||| ||||| || |||||| || || || | || | ||| ||| Sbjct 1683390 GAGCATCAATGTCTCCATACAGCTCTTCCAGTTCTGCTGCCTTTTCTTCCTCTCCT 1683445 Score = 86.0 bits (94), Expect = 9e-12 Identities = 176/261 (67%), Gaps = 2/261 (1%) Strand=Plus/Plus Query 9710 TGGTT--TCCCCGGTAATGATTAGACGAGTGGTTTGAAACAACTGCTCGTCACCCCATTC 9767 ||||| || ||| | | ||| || || | || || || | ||||||||||| ||| Sbjct 1685109 TGGTTCCTCACCGATGAGGATGAGCCGCGCCGTCTGGAAGAGCTGCTCGTCACTCCAGGT 1685168 Query 9768 CGGGTGTTCGTGTTTGAGAACATCGCAGACCCTGTTGTGTTCTCTCAGCCATATGGTGGC 9827 || || || | ||||| | || ||||| | |||||| || | ||||| | ||||| Sbjct 1685169 GGGATGGTCCCGCTTGAGCAGGTCACAGACGCGGTTGTGCTCGCGTAGCCAGAGCGTGGC 1685228 Query 9828 GTACATCATTAAACCCGGCACTAAACCAAACACTTCATTCCCCACTGCAAAGCGCAGATC 9887 ||||| | ||||||| | || ||||| || | ||||||||| | || | || Sbjct 1685229 GTACACGCAGAGCCCCGGCAGCAGCCCGAACACCTCCTGCCCCACTGCCAGCTGCTGCTC 1685288 Query 9888 ATCGGGCACTTCGGGCGCATACAGCATATGCACCTGGGTCTCTTTGACGGTGGGGGGATA 9947 | ||||||| | | || |||| ||| || ||| | | ||| |||| |||| || || Sbjct 1685289 CTTGGGCACTCCCGACGGGTACACCATGTGAACCGGAGCCTCAGTGACCATGGGCGGGTA 1685348 Query 9948 CATTTCACCGTCAATAACCTG 9968 || || || || | ||||| Sbjct 1685349 CACCTCTCCATCCACCACCTG 1685369 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 723712846945000