Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parus_20major_20[refseq_20GCF_5F001522545.2_202016-06-30] 1,675 sequences; 1,020,310,768 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq25 95.1 5e-14 seq17 84.2 9e-11 >seq25 Length=6808513 Score = 95.1 bits (104), Expect = 5e-14 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 451313 GTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACT 451372 |||||| |||||||| | ||||| || || |||||||| || | || || || ||||| Sbjct 3075938 GTTACTAATGCAGTAGTGACTGTCCCAGCCTATTTCAACGACTCCCAGCGCCAGGCAACG 3075879 Query 451373 AAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCA 451432 |||||||| ||| |||||| || | || || || |||| || || || || |||||| Sbjct 3075878 AAAGATGCTGGAACTATTGCAGGGCTCAACGTGCTGAGAATCATCAACGAGCCCACAGCA 3075819 Query 451433 GCTGCTCTAGCATATGGACT 451452 ||||| | || ||||| || Sbjct 3075818 GCTGCCATTGCCTATGGGCT 3075799 >seq17 Length=13820886 Score = 84.2 bits (92), Expect = 9e-11 Identities = 114/159 (72%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 391049 AATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATC 391108 |||| | || ||||| || || |||||||| || || || || ||||| || || | Sbjct 1693482 AATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTTGAGGTGGAGCCCAG 1693541 Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168 ||| | |||||| | | || || || ||||| |||||||| || ||||||||||| Sbjct 1693542 TGACACCATTGAGAATGTCAAGGCCAAGATCCAAGACAAGGAAGGCATCCCTCCTGATCA 1693601 Query 391169 ACAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGG 391207 || | | |||||| | ||||| || || |||||||| Sbjct 1693602 GCAGAGGCTGATTTTCGCTGGGAAGCAGCTGGAAGATGG 1693640 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1975675999230900