Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parus_20major_20[refseq_20GCF_5F001522545.2_202016-06-30] 1,675 sequences; 1,020,310,768 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq7 295 8e-75 seq25 172 7e-38 >seq7 Length=61875929 Score = 295 bits (326), Expect = 8e-75 Identities = 1028/1592 (65%), Gaps = 22/1592 (1%) Strand=Plus/Plus Query 6568 TTCATCTTCATCTTTATACTTTTCCGCATCTTGGACCATCTTTTCAATGTCTTCTTTCGA 6627 |||||| || |||| ||||| || || ||||| ||||| |||||||| || || Sbjct 54942602 TTCATCCTCTGCTTTGTACTTCTCTGCTTCTTGCACCATACGGTCAATGTCGTCCTTGCT 54942661 Query 6628 TAATCTCCCCTTATCATTCGTAATCGTAATCTTTTCGGATTTACCCGAGGCCTTATCTTC 6687 | | ||||| || || || || || ||||| | ||||||| | ||| || | Sbjct 54942662 GAGGCGACCCTTGTCGTTGGTGATGGTGATCTTGTTCTCCTTACCCGTGCTCTTGTCCAC 54942721 Query 6688 AGCACTTACATTCAAAATACCATTTGCATCAACATCGAACCTTACATTAATTTGTGGTGT 6747 ||||| ||||||| |||||||| ||||| | || || |||| | || || || Sbjct 54942722 GGCACTGACATTCAGGATACCATTGGCATCGATGTCAAAAGTTACCTCGATCTGGGGGAC 54942781 Query 6748 ACCCCTCGGTGCGGCTGGAATACCCGTTAAATCAAATGTACCAAGTAAACTGTTATCCGT 6807 ||||| ||||| | || || || |||| ||||| | || || || |||||||| | Sbjct 54942782 TCCCCTGGGTGCTGGGGGGATGCCTGTTAGGTCAAACTTGCCCAGCAAGTTGTTATCCCT 54942841 Query 6808 CGCCTTCTTACGTTCACCTTCATAGACTTTAATTGTCACCGCAGGT-TGATTATCTTGTG 6866 | | | | ||||| ||||| || | | || || | | || || ||| Sbjct 54942842 TGTCATAGCCCTCTCACCCTCATACACCTGGACCAGGAC-GCTGCTCTGGTTGTCTGAGT 54942900 Query 6867 CCGTTGAGAAGATTTGTTCTTTCTTAGATGGAATCGTCGTATTTCTCGGAATAACCGGGG 6926 || | |||| | || || || | || || || || || | | || | | | Sbjct 54942901 AGGTGGTGAAGGTCTGAGTTTGTTTGGTGGGGATGGTGGTGTTGCGCTTGATGAGAGCAG 54942960 Query 6927 TCATAATACCACCCATAGTTTCGAGTCCAAGAGACAGAGGTGTCACGTCCAAGAGTAACA 6986 |||| | || || || |||| || || |||||||| || || ||||| || | || Sbjct 54942961 TCATCACGCCTCCAGCCGTCTCGATGCCCAGGGACAGAGGGGTGACATCCAACAGCAGCA 54943020 Query 6987 GGTCTTGAACAGATTCGTTCCCTTCACCCGTTAAGATGGCGGCTTGGACCGTCGCCCCGT 7046 | || || ||| || | || ||| | | ||| || ||||| || | || || | Sbjct 54943021 GATCCTGCACATTCTCAGACTTGTCTCCCATGAGGATAGCTGCTTGTACAGCAGCGCCAT 54943080 Query 7047 ATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAATAATCCG 7106 | || || |||||||| ||||| || | || || || || ||||| || || ||||| Sbjct 54943081 AAGCCACAGCCTCATCAGGGTTGATGCTCTTGTTGAGCTCCTTACCATTGAAGAAATCCT 54943140 Query 7107 ATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATTTCATTCA 7166 || || | || || || ||||| || || || ||||| |||| ||||| || | | Sbjct 54943141 GTAGCAGCTTCTGGATCTTGGGGATCCGGGTAGAGCCACCCACCAGCACGATCTCCTGGA 54943200 Query 7167 CTTTCGATTTATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCATACATTTAC 7226 | || |||| ||| | || || || | || || || || |||| || Sbjct 54943201 TCTGGCCCTTGTCGAGCTTGGCATCACGGAGAGCCTTCTCCACCGGCTCCAGGGTGCCAC 54943260 Query 7227 GGAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAGAAATCAA 7286 |||| | ||| | || ||||||||||| ||||| |||||||| || ||||| |||| Sbjct 54943261 GGAAGAGGTCAGCATTGAGCTCCTCAAAACGGGCACGAGTAATGGAGGTGTAGAAGTCAA 54943320 Query 7287 CGCCGTCGTATAACGAATCAATTTCAATGGTTGTTTGTGCCGTCGAAGATAACGTTCGCT 7346 || || | | || ||||| |||||| | | |||| | || | || |||| Sbjct 54943321 TACCCTCAAAGAGAGAGTCAATCTCAATGCTGGCCTGTGTGGAGGAGCTGAGGGTCCGCT 54943380 Query 7347 TTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAAATATCTT 7406 | || | |||||| || || || | || | | || ||| ||| || | ||| || Sbjct 54943381 TCGCTCTCTCACAAGCTGTGCGCAGCCGCCTCACCGCTCGCTTGTTGCCAGCAATGTCAC 54943440 Query 7407 TCTTATGTTTACGTTTAAACTCTTCAGAGAAGTGTCGAAGGAGTCTCGAATCGAAATCTT 7466 ||| || ||||| || || ||||| ||||| | | | || || || | Sbjct 54943441 GCTTGTGCTTACGCTTGAATTCTTCCACAAAGTGGTTCACCATGCGGTTGTCAAAGTCCT 54943500 Query 7467 CACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAATGT 7526 | |||||||| || || || || || || | || || ||||| || || | |||||| Sbjct 54943501 CTCCACCCAAATGGGTGTCACCAGCCGTGGACTTTACCTCAAAAATCCCATCCTCAATGG 54943560 Query 7527 TTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTCGTATCGT 7586 | | | || ||||| || || || || ||||||||||| ||||| || ||| | || Sbjct 54943561 TAAGGATTGAGACATCGAAAGTGCCCCCTCCCAGGTCAAAGATGAGCACATTCTTCTCTC 54943620 Query 7587 C------GTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAA 7640 | | | ||||| || || || || || ||||| || || || || ||||| | Sbjct 54943621 CAGCCCGGGTTCCTTTCTTGTCCAGGCCATAAGCAATAGCAGCTGCAGTGGGCTCATTGA 54943680 Query 7641 TAATACG-AAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGC 7699 | ||||| | ||| || ||||||| || || | ||||| || || || || || || Sbjct 54943681 TGATACGCATCACA-TTGAGGCCAGTGATGGTGCCGGCATCCTTGGTGGCCTGGCGCTGG 54943739 Query 7700 GAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATAC 7759 ||||| || ||||| || || || || | ||| |||| | || || || ||||| Sbjct 54943740 GAATCATTGAAGTACGCTGGCACTGTGATGACAGCGTTCTGCACCTTGCACCCTAGATAG 54943799 Query 7760 GATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCAAAC 7819 | || || || || ||||| ||||| || ||||| || ||||| || | | | | Sbjct 54943800 GCCTCAGCAATCTCCTTCATCTTGGTGAGCACCATGGAGCTGATCTCCTCTG-GGAAGAA 54943858 Query 7820 TGT-TTCGTTTCACCGTTAAAATCAACTTCAATCATGGGTTTATCCGCAGCAC-CGGGGA 7877 || ||| | || || || | || || | | | |||| || || || | || | Sbjct 54943859 GGTCTTCATCTCCCCTTTGTACTCCACCTGCACCTTGGGCTT----GCCGCTCTCGTTCA 54943914 Query 7878 TAACCTTATACGACCAATCTTTCATATCGTCTTGGACCTGTTGGTCCGAAAACTTTCTTC 7937 || | | ||||| ||||| || || ||| |||| | |||| | | Sbjct 54943915 CCACACGGAAAGGCCAATGCTTCATGTCTGACTGCACCGTGGGGTCGTCATACTTGCGGC 54943974 Query 7938 CGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTTCG 7997 |||| || ||||| |||||||| | ||||| |||||||||| ||| |||||||| | Sbjct 54943975 CGATGAGGCGCTTGGCATCAAAGATGGTGTTGGTGGGGTTCATCGCTACCTGGTTCTTAG 54944034 Query 7998 CCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGG-GTCGTT 8056 | || |||||||| || || || || || || ||||| || || | |||| || || Sbjct 54944035 CAGCATCCCCGATGAGGCGCTCCGTA---TCGGTGAACGCCACATA-GCTGGGTGTGGTG 54944090 Query 8057 CGATTCCCTTGGTCGTTCGCAATAATTTCTACGCGGTCGTTTTGCCAGACGCCGACGCAC 8116 || || || |||||||| || || || || || | ||| || | || || ||||| Sbjct 54944091 CGGTTACCCTGGTCGTTGGCGATGATCTCCACTTTGCCGTGCTGGAAAACACCCACGCAG 54944150 Query 8117 GAATACGTTGTTCCTAAATCAATACCGATTGC 8148 || ||||| || || | || || ||||| || Sbjct 54944151 GAGTACGTGGTGCCCAGGTCGATGCCGATCGC 54944182 >seq25 Length=6808513 Score = 172 bits (190), Expect = 7e-38 Identities = 362/540 (67%), Gaps = 0/540 (0%) Strand=Plus/Plus Query 7040 GCCCCGTATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAA 7099 || || || || || |||||||||||||| || | || || || ||||| ||||| || Sbjct 3075151 GCACCATACGCCACAGCCTCATCGGGGTTGATGCTCTTGTTGAGCTCTTTGCCGTTGAAG 3075210 Query 7100 TAATCCGATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATT 7159 | ||| | || || || || || ||||| || || || || || |||| ||||| Sbjct 3075211 AAGTCCTGCAGCAGTTTCTGGATCTTGGGGATGCGCGTGGAGCCTCCCACCAGCACGATG 3075270 Query 7160 TCATTCACTTTCGATTTATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCATA 7219 || | | | ||| || || | ||| | || | || | || || || || |||| Sbjct 3075271 TCGTGGATCTGCGACTTGTCCAGCTTGGCATCCCTCAGGGCCTTCTCCACGGGGTCCAGG 3075330 Query 7220 CATTTACGGAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAG 7279 |||||||| ||| | || |||||||| || || | ||| ||||| || ||| Sbjct 3075331 GTGCCACGGAACAGGTCAGCATTGAGCTCCTCAAAGCGAGCCCTGGTGATGGAGGTGTAG 3075390 Query 7280 AAATCAACGCCGTCGTATAACGAATCAATTTCAATGGTTGTTTGTGCCGTCGAAGATAAC 7339 || || | ||| ||||| | || || || || ||| | | || | | || || | Sbjct 3075391 AAGTCGATGCCCTCGTAGAGGGAGTCGATCTCGATGCTGGCCTGGGTGGAGGAGGACAGG 3075450 Query 7340 GTTCGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAA 7399 || ||||| |||||||| || || || || | || || | ||||||| ||| || Sbjct 3075451 GTGCGCTTGGCGCGCTCGCAGGCGGTGCGCAGGCGGCGCACGGCACGCTTGTTCTCGCTG 3075510 Query 7400 ATATCTTTCTTATGTTTACGTTTAAACTCTTCAGAGAAGTGTCGAAGGAGTCTCGAATCG 7459 || || ||||| || || || || ||||| | |||||| | | | ||| Sbjct 3075511 ATGTCCTTCTTGTGCTTGCGCTTGAACTCGGCGATGAAGTGGTTCACCATGCGGTTGTCG 3075570 Query 7460 AAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCT 7519 || || || ||||||||||| || ||||| || || | ||| || |||||||| || || Sbjct 3075571 AAGTCCTCCCCACCCAAGTGGGTGTCCCCTGCCGTGGATTTCACCTCAAAGATGCCATCT 3075630 Query 7520 TCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTC 7579 |||||| | | | || ||||| || || || || |||||||| || ||||| |||||| Sbjct 3075631 TCAATGGTCAGGATGGACACATCGAAGGTGCCGCCGCCCAGGTCGAAGATGAGAACGTTC 3075690 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635119501907000