Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parus_20major_20[refseq_20GCF_5F001522545.2_202016-06-30] 1,675 sequences; 1,020,310,768 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq17 105 4e-18 >seq17 Length=13820886 Score = 105 bits (116), Expect = 4e-18 Identities = 165/234 (71%), Gaps = 4/234 (2%) Strand=Plus/Minus Query 34753 TTCCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCG 34812 |||| |||| || | || |||| ||| | ||| ||||||||| ||||| ||||| | Sbjct 1693711 TTCCACCCCGCAGGCGCAGCACCAGGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCAG 1693652 Query 34813 AAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCG 34872 | ||| | || |||| |||||||| || || || || || || | ||||| || | | Sbjct 1693651 ACAGGGTACGGCCATCTTCCAGCTGCTTCCCAGCGAAAATCAGCCTCTGCTGATCAGGAG 1693592 Query 34873 GCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTC 34930 | | || |||||||| ||||| ||||| || || || | |||| || ||| Sbjct 1693591 GGATGCCTTCCTTGTCTTGGATCTTGGCCTTGAC--ATTCTCAATGGTGTCACTGGGCTC 1693534 Query 34931 AACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATATT 34984 || || | ||| ||||| || || || || |||||||| ||||||||||| || Sbjct 1693533 CACCTCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCATTTT 1693480 Score = 104 bits (114), Expect = 2e-17 Identities = 138/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 ||| ||||| ||||| ||||| || ||| | || |||| |||||||| || || ||||| Sbjct 1693902 TTCCTTCTGGATGTTGTAGTCAGACAGGGTACGGCCATCTTCCAGCTGCTTGCCAGCAAA 1693843 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 || || | |||||||| | || | || ||||| || ||||| |||||| Sbjct 1693842 AATAAGCCTCTGCTGGTCAGGAGGGATGCCTTCCTTATCCTGGATCTTGGCCTTGACGTT 1693783 Query 34910 TGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCAC 34969 | || | |||| || ||| || || | ||| ||||| || ||||| || ||||| || Sbjct 1693782 CTCAATGGTGTCACTGGGCTCGACCTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTGAC 1693723 Query 34970 AAAGATCTGCAT 34981 |||||||||||| Sbjct 1693722 AAAGATCTGCAT 1693711 Score = 93.3 bits (102), Expect = 3e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| ||||| || ||| | || |||| |||||||| || || ||||| Sbjct 1694129 TCCTTCTGGATGTTGTAGTCAGACAGGGTACGGCCATCTTCCAGCTGCTTGCCAGCAAAG 1694070 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || | |||||||| | || | || ||||| || ||||| |||||| Sbjct 1694069 ATCAGCCTCTGCTGGTCAGGAGGGATGCCTTCCTTATCCTGGATCTTGGCCTTGACGTTC 1694010 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | |||| || ||| || || | || || || || || || || ||||||||| Sbjct 1694009 TCAATGGTGTCACTGGGCTCCACTTCCAGAGTGATAGTCTTGCCAGTCAGGGTCTTCACA 1693950 Query 34971 AAGATCTGCAT 34981 ||||||||||| Sbjct 1693949 AAGATCTGCAT 1693939 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324626972909400