Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parus_20major_20[refseq_20GCF_5F001522545.2_202016-06-30] 1,675 sequences; 1,020,310,768 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq25 102 7e-16 seq17 86.0 5e-11 >seq25 Length=6808513 Score = 102 bits (112), Expect = 7e-16 Identities = 110/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 550391 GTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACT 550450 ||||| |||||||| | ||||| ||||| ||||| || ||||| || || || || || Sbjct 3075938 GTTACTAATGCAGTAGTGACTGTCCCAGCCTATTTCAACGACTCCCAGCGCCAGGCAACG 3075879 Query 550451 AAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCT 550510 |||||||||||| |||||| || || || || || | || ||||| || || || || Sbjct 3075878 AAAGATGCTGGAACTATTGCAGGGCTCAACGTGCTGAGAATCATCAACGAGCCCACAGCA 3075819 Query 550511 GCTGCACTTGCATATGGACTTGATAA 550536 ||||| |||| ||||| || || || Sbjct 3075818 GCTGCCATTGCCTATGGGCTGGACAA 3075793 >seq17 Length=13820886 Score = 86.0 bits (94), Expect = 5e-11 Identities = 118/165 (72%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 563254 CTGAGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTT 563313 ||||| || || |||||||| || ||| ||| || || ||||| |||| || || Sbjct 1693931 CTGAGGCGCAGCACAAGATGCAGAGTAGATTCCTTCTGGATGTTGTAGTCAGACAGGGTA 1693872 Query 563314 CTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCT 563373 | |||||| || || || || ||||||||||| || ||||| |||||||| || ||| Sbjct 1693871 CGGCCATCTTCCAGCTGCTTGCCAGCAAAAATAAGCCTCTGCTGGTCAGGAGGGATGCCT 1693812 Query 563374 TCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTG 563418 || ||||| || || || || || |||||| || ||| || Sbjct 1693811 TCCTTATCCTGGATCTTGGCCTTGACGTTCTCAATGGTGTCACTG 1693767 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4029207418445750