Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parus_20major_20[refseq_20GCF_5F001522545.2_202016-06-30] 1,675 sequences; 1,020,310,768 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq1 136 7e-27 seq30 127 4e-24 seq32 118 2e-21 seq3 91.5 3e-13 seq11 84.2 4e-11 >seq1 Length=114059860 Score = 136 bits (150), Expect = 7e-27 Identities = 128/163 (79%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 213528 GTGTACTCCATGATCTCGGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGG 213587 |||||||||| |||||||||||||||||||||||| |||||||||||||||||| ||| Sbjct 24006 GTGTACTCCACGATCTCGGTGCACAGGTTGCTGCACTTGATGGTGCCCAGGTTCTGCTGG 24065 Query 213588 TTTGACTTTGCGTTGGCAGAATCCTTGTAGAGCATGTAGGGGGACCCGGTCTCTAGCTGG 213647 || ||| |||| || |||||||||||||||||||||| || ||||| |||| Sbjct 24066 TTGCTCTTCCTGTTGCAGGAGTCCTTGTAGAGCATGTAGGGGGTGCCAGTCTCGGTCTGG 24125 Query 213648 GACACCAGTATCTGGCTCCAGAGGTACCTGGCCTTGACCACCC 213690 ||| | | || | |||||| | | |||||| ||||||| Sbjct 24126 GACTCGATGATGGCGTACCAGAGCTGCTGGGCCTTCACCACCC 24168 Score = 113 bits (124), Expect = 8e-20 Identities = 145/200 (73%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 213141 CCTTTGCTCACGGGGCTGCCCTGGTAAGAGGAGTAGGGGCCATGCTCCTTGGCCAGCTCG 213200 || ||||| || || ||||| ||| | | |||||||| |||||| |||||||||| Sbjct 22256 CCCTTGCTGACCGGAGAGCCCTCGTAGGTGTCATAGGGGCCGTGCTCCCTGGCCAGCTCA 22315 Query 213201 CAGGACGCCTGCAGGGCAGCGTAGTAGATGGTTTCAAATATCTCCCTGTTGAGCTTCTTG 213260 ||| |||| |||||| ||||||| ||||| || || || | | |||||| || Sbjct 22316 CAGCTGGCCTCCAGGGCCCCGTAGTAAATGGTCTCGAAGATGTGCTGGTTGAGGCGCTGA 22375 Query 213261 GCCTCTGGGGACGTGAAGGGCATCATCATGCGTTGGAACACATCAGCCAGCCCCTGGACC 213320 ||||| | | | |||||| | | ||||| | ||| | |||||||| ||||| || Sbjct 22376 GCCTCGGCGCTCTCGAAGGGGAACCTCATGAGGATGAAGGCGTCAGCCAGGCCCTGCACG 22435 Query 213321 CCGATGCCGATGGGTCTGTG 213340 |||||||||||||| | ||| Sbjct 22436 CCGATGCCGATGGGGCGGTG 22455 Score = 107 bits (118), Expect = 4e-18 Identities = 104/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 212918 CTGGAAGTCACCTGAGAGCACCCTCCTCTGGTAAAAGTTTGAAGTGTAGGGCTCGATGCT 212977 |||||| || |||||||||||||| | ||| | ||| ||||||||||| ||| Sbjct 20338 CTGGAACTCCCCTGAGAGCACCCTGCGTGTGTAGATGTTGCTGGTGTAGGGCTCCATGGA 20397 Query 212978 CTCGTTGTTCCCCAGAATCTGTGCAGTGCTGGCTGTGGGCATGGGAGCCACCAGGAGACT 213037 ||||||||| ||||| ||||| |||||| |||||| |||||||| | | ||||| || Sbjct 20398 CTCGTTGTTGCCCAGGATCTGGGCAGTGGAGGCTGTTGGCATGGGGGAAATGAGGAGGCT 20457 Query 213038 GTTCCTCACTCCGT 213051 |||||| || |||| Sbjct 20458 GTTCCTGACACCGT 20471 Score = 105 bits (116), Expect = 1e-17 Identities = 114/151 (75%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 213813 ACTCTCTGCATGAACAGGTCCGGGACCCACAGCGCGGTGAACAGGTCCCTGGTCCTCCTC 213872 |||| || |||||| || || |||| ||| ||||| |||||||||||||| | | | Sbjct 25233 ACTCGCTTCATGAAGAGATCAGGGATCCAGAGCGCAAAGAACAGGTCCCTGGCTCGCTGC 25292 Query 213873 TCGTCCACTCCAGAGTTTTTGCGCAGATCTAGAAAGTCAAAGATGTCCGCGTGCCACGGC 213932 || || |||| ||| || || || || || |||||||||||| |||||||||| Sbjct 25293 TCTTCTTTCCCAGTGTTCTTCTTCAAGTCCAGGAACTCAAAGATGTCCAAGTGCCACGGC 25352 Query 213933 TCCATGTAGATGGCAAAGGCGCCCGGCCTCT 213963 |||| |||||||||||| || || || |||| Sbjct 25353 TCCAGGTAGATGGCAAAAGCTCCAGGTCTCT 25383 >seq30 Length=5101010 Score = 127 bits (140), Expect = 4e-24 Identities = 156/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 241415 AGGACCTCCTGTTTGAGTTGGGCCACCTGGTCCCGCAGAACGGACGCGGTATTGGACAGT 241474 || |||| ||| ||||| ||||| ||||| || || || | | ||||| || || Sbjct 3938620 AGCACCTTCTGCTTGAGCTGGGCGACCTGCTCGCGGAGCAGGCTGGCGGTGGAGGCGAGC 3938561 Query 241475 CCTGCGTTGTCAGACTTGAGCACCTTCACTTTCTCCTCCAGCCGCGCGATGCGTTCCAGT 241534 | | ||| | |||||| |||||| |||||||||||||| | ||| || ||||| Sbjct 3938560 TCCGTGTTCTGGCTCTTGAGGCTCTTCACCTTCTCCTCCAGCCGGGAGATCCGCTCCAGC 3938501 Query 241535 TTGCGCCGGCGGCATTTGGTGGCTGCCAAGCGGTTCCGGAGTCTCTTACGTTCCGCCTTG 241594 || | | |||||| |||| ||| || | |||||||| || | ||| |||||||||||| Sbjct 3938500 TTCCTCTTGCGGCACTTGGAGGCGGCGATGCGGTTCCTCAGCCGCTTCCGTTCCGCCTTG 3938441 Query 241595 ATGCGTTCCTGGTCCTCCATGTCGATCGGAGAC 241627 ||||| ||||| ||||||||||| || ||| Sbjct 3938440 ATGCGCTCCTGCGTGTCCATGTCGATGGGGGAC 3938408 >seq32 Length=74514349 Score = 118 bits (130), Expect = 2e-21 Identities = 145/198 (73%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 241430 AGTTGGGCCACCTGGTCCCGCAGAACGGACGCGGTATTGGACAGTCCTGCGTTGTCAGAC 241489 || |||| |||||| | || || | | ||||| || ||| | ||||| | | Sbjct 43991412 AGCTGGGTGACCTGGGCGCGGAGGAGGTTGGCGGTGGCGGCCAGCTCGGCGTTCTGCCCC 43991471 Query 241490 TTGAGCACCTTCACTTTCTCCTCCAGCCGCGCGATGCGTTCCAGTTTGCGCCGGCGGCAT 241549 |||||| | ||||| |||||||||||||| |||||||| ||||| || ||||||||||| Sbjct 43991472 TTGAGCGCTTTCACCTTCTCCTCCAGCCGGGCGATGCGCTCCAGCTTCCGCCGGCGGCAC 43991531 Query 241550 TTGGTGGCTGCCAAGCGGTTCCGGAGTCTCTTACGTTCCGCCTTGATGCGTTCCTGGTCC 241609 |||| ||| || | |||||| || || | ||| || || ||||| | || |||||| | Sbjct 43991532 TTGGAGGCGGCGATGCGGTTTCGCAGCCGCTTGCGCTCTGCCTTCAGCCGCTCCTGGCTC 43991591 Query 241610 TCCATGTCGATCGGAGAC 241627 ||| ||| | ||| ||| Sbjct 43991592 TCCGCGTCCAGCGGCGAC 43991609 >seq3 Length=111636321 Score = 91.5 bits (100), Expect = 3e-13 Identities = 86/110 (78%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 48164 CTGATGAGCACGTTGGAGAAGCAGAGACCAGGCATGACCCCCCTCTGTTTGAGCCAGAAA 48223 ||||||||| | || || || ||| |||||||| | || || | || ||||| ||| Sbjct 98374644 CTGATGAGCTCATTAGAAAAAGTGAGTCCAGGCATTAATCCTCTTTTCTTCAGCCAAAAA 98374585 Query 48224 ATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCCTCCACTGCCGCGAACGC 48273 |||| || ||||||||||||||||||||||| |||||||| || || || Sbjct 98374584 ATTGATGCAAAAGAGCCAGAGAAGAAGATGCCTTCCACTGCTGCAAAGGC 98374535 >seq11 Length=25106277 Score = 84.2 bits (92), Expect = 4e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 38967 TCCCACCTGTTGGCGGAGAAGAGCAGGTGGACTGCGTGGTCGTCCAGCTCCGTCTTACTC 39026 ||||| | |||||| |||||||||||||| | | |||||| ||||| | | ||| ||| Sbjct 4141429 TCCCAGCGGTTGGCAGAGAAGAGCAGGTGAATGGTGTGGTCCTCCAGGTTCTTCTCCCTC 4141488 Query 39027 TCCAGGTACGAGCTGATCATCTTTCCGATGGTAGTGGTTCTGTC 39070 ||||||| |||||||||| || || || ||||||||| || Sbjct 4141489 CCCAGGTAGGAGCTGATCAGCTGCCCAATCTCAGTGGTTCTTTC 4141532 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931513296032000