Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parus_20major_20[refseq_20GCF_5F001522545.2_202016-06-30] 1,675 sequences; 1,020,310,768 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq17 96.9 2e-14 >seq17 Length=13820886 Score = 96.9 bits (106), Expect = 2e-14 Identities = 127/176 (72%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 480594 TTATAATCAGCTAGAGTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGT 480653 || || |||| || || | | |||||| || ||||| ||||| ||||| || | || Sbjct 1693661 TTGTAGTCAGACAGGGTACGGCCATCTTCCAGCTGCTTCCCAGCGAAAATCAGCCTCTGC 1693602 Query 480654 TGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCA 480713 ||||||||||| || |||||||||||||| ||||| |||||| ||||| || ||| Sbjct 1693601 TGATCAGGAGGGATGCCTTCCTTGTCTTGGATCTTGGCCTTGACATTCTCAATGGTGTCA 1693542 Query 480714 GTGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || | |||||||| || || || || || || ||||| ||||| || || Sbjct 1693541 CTGGGCTCCACCTCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTG 1693486 Score = 91.5 bits (100), Expect = 1e-12 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 480555 AGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTTCTG 480614 || || || |||||||| || ||| ||| || | || || |||| || || | | Sbjct 1693928 AGGCGCAGCACAAGATGCAGAGTAGATTCCTTCTGGATGTTGTAGTCAGACAGGGTACGG 1693869 Query 480615 TTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCC 480674 |||||| || ||||| |||||||||||||| | || || |||||||| || |||||| Sbjct 1693868 CCATCTTCCAGCTGCTTGCCAGCAAAAATAAGCCTCTGCTGGTCAGGAGGGATGCCTTCC 1693809 Query 480675 TTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTA 480734 || || || ||||| ||||| ||||| || ||| || | |||||||| Sbjct 1693808 TTATCCTGGATCTTGGCCTTGACGTTCTCAATGGTGTCACTGGGCTCGACCTCAAGGGTG 1693749 Query 480735 ATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || || || || || || ||||| || || || || Sbjct 1693748 ATGGTCTTGCCCGTCAGGGTCTTGACAAAGATCTG 1693714 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3268107351122900