Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parus_20major_20[refseq_20GCF_5F001522545.2_202016-06-30] 1,675 sequences; 1,020,310,768 total letters Query= NC_020474.2 Length=180421 Score E Sequences producing significant alignments: (Bits) Value seq32 215 6e-51 seq12 134 2e-26 >seq32 Length=74514349 Score = 215 bits (238), Expect = 6e-51 Identities = 655/1004 (65%), Gaps = 10/1004 (1%) Strand=Plus/Minus Query 160033 AGAT-CAGCGATCTGTGTCGCAGATGTTCGTCCAGACATTGGACGGCGAACACGTCAACG 160091 |||| ||| | | |||| |||| || || |||| || | || || || ||| || Sbjct 33619107 AGATACAGAGCTTTGTGCCGCAAATACTCTTCCAAGCACTTCACTGCAAAAGGGTCGACA 33619048 Query 160092 TCTTCGTCGAATTTATTTGCGAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCT 160151 || ||| || ||||| || || | ||||| ||| |||| ||||||| || |||| Sbjct 33619047 TCAGTGTCAAACTTATTAGCAAATAAGTGGTG---GTTTCGTAGCATCCAGTTCAAGTCT 33618991 Query 160152 CCGGACCCGAACACGCAGACGGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCT 160211 || || || || ||||| || || ||||| || || |||| || ||||| | || Sbjct 33618990 CCTACTCCAAAAACACAGACAGAGCGAATGTGAACTCCACTGCATGGTGGGTAGGGTGCA 33618931 Query 160212 CCTTTCGCCACGTCACCTTCGTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATG 160271 ||||| | ||| |||||||| ||||||||||||| ||||| ||||| | || | |||| Sbjct 33618930 CCTTTGGACACATCACCTTCAAAGTACTGCCACTTGACAAATCTGGCCAGTGCATTCATG 33618871 Query 160272 TCGGAGGTGTCGTATTTGTACATCAGG--GGAACGGCACCGGGAACGCCGGGCATACGCT 160329 || || ||| || |||| || | || | || || || || || | || || | || Sbjct 33618870 TCAGAAACGTCATACTTGT-CA-CTGGAAGAAAATGCGCCTGGGACTTCAGGGATTCTCT 33618813 Query 160330 GTAGGGTGGCCCACAGGTGTTCGTCGGGGCTGTACGTGTCCTTAGACCATTCCATGAACT 160389 | | || |||||||||| || || |||||||| || || || | ||| || ||||||| Sbjct 33618812 GAATTGTTGCCCACAGGTACTCATCTGGGCTGTAAGTATCTTTCGCCCACTCAATGAACT 33618753 Query 160390 CTCCGATTAACCTGTCCCGCAGAACGTGAGTAACGTAGGATCTGGTCACGACAAAGTACG 160449 ||| |||| || || | || || |||| | || ||||| || | Sbjct 33618752 TAAGTATTTTGCTGTTTTCTAGTACATATTCTACAAAGCTTCTGCTAACTACAAAATAAG 33618693 Query 160450 CGCTGCCGGAGAATATCGGTATGGGTATAGGCGGCGTGTCTTTGTCCTGACCGGTGTTAG 160509 | ||||| || || | || | | ||| || | |||||| || ||||| Sbjct 33618692 CACTGCCAGAAAAAACTGGAGTACTGAGAGGTGGTAGTTGTTTGTCTATGCCTGTGTTCT 33618633 Query 160510 ACACCACTCCTTTCACCAGCGCGTGTCGCTTCTTCCACCTGACCATCTTGTGCGGTGGCA 160569 | || | || | | | || | || |||||||| || || | ||||| Sbjct 33618632 TTATTTTACCATCAACAATCTCATGGTGTTTTTTCCACCTTACTTCTTTATAAACTGGCA 33618573 Query 160570 TGCGTTCCGTCTCTAGACTGTTGGCACCGTCGAGCGATTTCAGCTGCTTGACGATCTCTA 160629 | ||| || || | ||||| |||| | || | ||| | | || || || || Sbjct 33618572 TTTTTTCTGTTTCCAAGCTGTTTTCACCCTTAAGGGCTTTTAATTTCTCTACTATTTCCT 33618513 Query 160630 GGTTCGTCTTGAGCGGAAAGTCGGTACCGCACAAGTTTATCACGTACTTCCATTTCGCGC 160689 |||| ||||| | |||||||| |||| || | |||||| | ||| ||||| || | | Sbjct 33618512 GGTTTGTCTTTATAGGAAAGTCCATACCACATAGGTTTATTAGGTATTTCCAGTTTGAAC 33618453 Query 160690 TCAGGTCGTGCAGGTCCCTCATGCAATTAATATCTGCCTGCACGCGGCTCCAGGAAGCGT 160749 | || || || ||||||| ||||| || |||||||| | |||||| ||||| | Sbjct 33618452 TTCTTCTGTAGAGATCTTTCATGCAGTTAATGTCCGCCTGCACTCTGCTCCATGAAGCAT 33618393 Query 160750 ACACTACGTTCTCTAGTTTACTGGCCACAAAGACGTTATCGAAACACGACACGATTCCCA 160809 | || || | |||| | |||| | |||||| ||||| ||||| || || |||||| Sbjct 33618392 ATACCACACTTTCTAACTGGCTGGAAATAAAGACATTATCAAAACATGAGACTATTCCCT 33618333 Query 160810 CCACCGCCAGAAAGAACATCTTAT-CCGCCTTTCGGTCCACGTGCACGCAATACAGGTTC 160868 ||| | ||| || || || | | |||| ||| || || | ||| || | ||| Sbjct 33618332 TCACAG-CAGCAAAAAAGGATTCTGGAGACTTTTTGTCTACATGAATGCAGTAAAAATTC 33618274 Query 160869 TGAGGCGCGTAGATGGCCCTGAGCAACCTCTCGAACATCTCTATCTTATGATGGATCACG 160928 || || |||||||| | || || | || || | |||||| || || |||| | || Sbjct 33618273 TGTGGAGCGTAGATTGATCTTAGAAGTCTATCAAGCATCTCAATTTTGTGATAAACAACT 33618214 Query 160929 ATAGAGTAGGCTATCGGAAACTCGGTCTCCTCGCGACTCAGGGACCCGGTCAGGTACTTT 160988 || ||||| || || ||||| || | || || ||| || | | | | | ||| || Sbjct 33618213 ATTGAGTAAGCAATTGGAAATTCTGCTTCTTCATTACTGAGAGGCTCCATAATGTATTTC 33618154 Query 160989 CGCGTCTTGATAAAATAATCACAATCCCGCGTCATGTTGATATA 161032 | |||||| | || | |||| || |||||||| ||||| Sbjct 33618153 CTAGTCTTGGTGAAGGAGGCACAGTCTGCAGTCATGTTAATATA 33618110 >seq12 Length=20202851 Score = 134 bits (148), Expect = 2e-26 Identities = 237/345 (69%), Gaps = 3/345 (1%) Strand=Plus/Plus Query 160045 TGTGTCGCAGATGTTCGTCCAGACATTGGACGGCGAACACGTCAACGTCTTCGTCGAATT 160104 |||| ||||| || || || ||||| |||| ||| |||| || || |||||| | Sbjct 4813635 TGTGGCGCAGGTGCTCCTCGAGACACTGGAGGGCCGCATCGTCCACCTCGGGGTCGAACT 4813694 Query 160105 TATTTGCGAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGACCCGAACA 160164 | || || || |||||||| | ||| || |||||| ||||||| || |||| | | Sbjct 4813695 TGTTGGCCAAGAGATGGTGC---TGCTGCAGCATCCAGGGCACGTCGCCCACCCCGTAGA 4813751 Query 160165 CGCAGACGGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTTCGCCACGT 160224 ||||| ||| || ||| |||| |||| |||||||| || || || | || Sbjct 4813752 TGCAGATGGAGCGCTGGTGGCGGCCGGTGCAGGGCGGGTAGGCCGCGCCCTTGCTGATGT 4813811 Query 160225 CACCTTCGTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGAGGTGTCGT 160284 | || || ||||| |||||| || | | || | || | |||||| ||| | | Sbjct 4813812 CCCCCTCCAGGTACTCCCACTTGACCAGGCGGGGAAGAGCGTTCATGTCCGAGAGCTGGA 4813871 Query 160285 ATTTGTACATCAGGGGAACGGCACCGGGAACGCCGGGCATACGCTGTAGGGTGGCCCACA 160344 | |||| | ||||| | | || || ||||| ||||| || | ||||||||||| | Sbjct 4813872 ACTTGTCGCTGGGGGGAGTGCCCCCCGGCACGCCCGGCATGCGGTTCAGGGTGGCCCAGA 4813931 Query 160345 GGTGTTCGTCGGGGCTGTACGTGTCCTTAGACCATTCCATGAACT 160389 ||| ||||| |||||||| ||||||| ||||| || | ||||| Sbjct 4813932 CGTGCTCGTCAGGGCTGTAGCTGTCCTTGGACCACTCGAGGAACT 4813976 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 577207114473000