Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parus_20major_20[refseq_20GCF_5F001522545.2_202016-06-30] 1,675 sequences; 1,020,310,768 total letters Query= NC_020864.1 Length=205622 Score E Sequences producing significant alignments: (Bits) Value seq7 306 5e-78 seq17 199 5e-46 seq25 107 3e-18 seq20 107 3e-18 seq18 100 4e-16 seq30 98.7 1e-15 >seq7 Length=61875929 Score = 306 bits (338), Expect = 5e-78 Identities = 1037/1595 (65%), Gaps = 33/1595 (2%) Strand=Plus/Minus Query 195299 GCTATTGGTATCGATTTAGGAACTACTTACTCATGTGTTGGTGTATGGCAAAATGATCGT 195358 || || || ||||| | || || || ||||| || || ||||| | || | | Sbjct 54944182 GCGATCGGCATCGACCTGGGCACCACGTACTCCTGCGTGGGTGTTTTCCAGCACGGCAAA 54944123 Query 195359 GTAGAGATTATCCCGAATGACCAAGGAAACCGTACAACTCCATCGTACGTTGCCTTTACA 195418 || ||||| ||| | || ||||| || ||||| || || || || || || || || Sbjct 54944122 GTGGAGATCATCGCCAACGACCAGGGTAACCGCACCACACCCAGCTATGTGGCGTTCACC 54944063 Query 195419 GATAATGAACGTCTCGTTGGAGATGCCGCAAAAAATCAGACAGCTATGAACCCTATCAAT 195478 |||| || || ||| | || ||||| || || || ||| ||| |||||||| | ||| Sbjct 54944062 GATACGGAGCGCCTCATCGGGGATGCTGCTAAGAACCAGGTAGCGATGAACCCCACCAAC 54944003 Query 195479 ACTGTCTTTGACGCGAAGCGTCTTATTGGTCGCAAGTTTTCGGATAAGAAAGTCCAAGAC 195538 || ||||||| || ||||| || || || ||||||| | || | || || Sbjct 54944002 ACCATCTTTGATGCCAAGCGCCTCATCGGCCGCAAGTATGACGACCCCACGGTGCAGTCA 54943943 Query 195539 GATATAAAGGACTGGTCTTATGAAGTTGTTCCCG-GTGTGGCTGATAAGCCTATGATTAA 195597 || || ||| | ||| ||| || || || | | ||| ||||| | | | | Sbjct 54943942 GACATGAAGCATTGGCCTTTCCGTGTGGTGAACGAGAGCGGC----AAGCCCAAGGTGCA 54943887 Query 195598 TGTTGAATTTCACGGTGAGAAGAAACAATTTGCTCCC-GAAGAAATTTCGTCTATGGTGT 195656 || || | | || |||| ||| | || |||| || || || || |||||| Sbjct 54943886 GGTGGAGTACAAAGGGGAGATGAAG-ACCTTCTTCCCAGAGGAGATCAGCTCCATGGTGC 54943828 Query 195657 TGATTAAGATGAAGGAGACTGCGGAATCTT-TCATGGGTAAAACTGTGAAAGATGCAGTT 195715 | | ||||||||||||| ||| || | | || |||| || ||| | | || || Sbjct 54943827 TCACCAAGATGAAGGAGATTGCTGAGGCCTATCTAGGGTGCAAG-GTGCAGAACGCTGTC 54943769 Query 195716 GTGACTGTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCTGCTGCT 195775 | || || || || ||||||| |||||| || || ||||| || ||||| || | | Sbjct 54943768 ATCACAGTGCCAGCGTACTTCAATGATTCCCAGCGCCAGGCCACCAAGGATGCCGGCACC 54943709 Query 195776 ATTGCGGGTCTAAACTGTCTTA-GAATTATCAATGAACCAACAGCGGCTGCAATTGCTTA 195834 || | || || || ||| | | || |||||||| || || || ||||| |||||||| Sbjct 54943708 ATCACTGGCCTCAA-TGTGATGCGTATCATCAATGAGCCCACTGCAGCTGCTATTGCTTA 54943650 Query 195835 TGGTCTGGACAAGAA------CAAGGACGAAGATAAAAATGTATTGATCTTTGATCTCGG 195888 ||| ||||||||||| | || | ||| || ||||| | |||||||| || || Sbjct 54943649 TGGCCTGGACAAGAAAGGAACCCGGGCTGGAGAGAAGAATGTGCTCATCTTTGACCTGGG 54943590 Query 195889 TGGTGGTACGTTTGATGTCTCACTTCTCAATATTGAAGGTGGTATATTCGAAGTAAAGGC 195948 || || || || ||||||||| | || | ||||| | ||| || || || |||||| | Sbjct 54943589 AGGGGGCACTTTCGATGTCTCAATCCTTACCATTGAGGATGGGATTTTTGAGGTAAAGTC 54943530 Query 195949 TACTGCTGGTGATACTCATCTAGGTGGTGAAGATTTCGATGCACGTCTTCTCCGTCA-TT 196007 || |||||||| || ||| | ||||| || || || || || | | || || Sbjct 54943529 CACGGCTGGTGACACCCATTTGGGTGGAGAGGACTTTGACAACCGCATGGTGAACCACTT 54943470 Query 196008 TGTCTGATGAGTTCCGTCGAAAGAATAAGAAAGATATTTCTGGAAATCCTAGGGCTCTTC 196067 ||| || || ||| || ||| | ||| || ||| |||| || | || | Sbjct 54943469 TGT-GGAAGAATTCAAGCGTAAGCACAAGCGTGACATTGCTGGCAACAAGCGAGCGGTGA 54943411 Query 196068 GTCGGCTTAGGACTGCATGTGAACGTGCCAAACGAACTCTCTCTTCTACGGCTCAAACAA 196127 | ||||| | || || ||||| | || || || || ||| || | | || | | Sbjct 54943410 GGCGGCTGCGCACAGCTTGTGAGAGAGCGAAGCGGACCCTCAGCTCCTCCACACAGGCCA 54943351 Query 196128 TGGTTGAGATTGATTCGTTGTTTGACGGAATTGACTTCTATACAACTATTACCCGTGCAC 196187 |||||||||| || | ||||| || ||||||||||| || | ||||| ||||| | Sbjct 54943350 GCATTGAGATTGACTCTCTCTTTGAGGGTATTGACTTCTACACCTCCATTACTCGTGCCC 54943291 Query 196188 GTTTTGAAGAGTTAAACTCTGATTTGTTTAGGAAGTGTATGGAACCTGTTGAACAAGTAC 196247 ||||||| ||| | || |||| | || | |||| || || || | | | Sbjct 54943290 GTTTTGAGGAGCTCAATGCTGACCTCTTCCGTGGCACCCTGGAGCCGGTGGAGAAGGCTC 54943231 Query 196248 TTCGTGACGCAAAGATGGATAAGTCTAAGGTTGATGAAATTGTCCTTGTGGGAGGATCAA 196307 | ||||| || ||| | || ||| || | | || || || || ||||| || || | Sbjct 54943230 TCCGTGATGCCAAGCTCGACAAGGGCCAGATCCAGGAGATCGTGCTGGTGGGTGGCTCTA 54943171 Query 196308 CCCGTATTCCGAAGATTCAACAGATGCTTTCTAGCTTCTTCAATAATAAAGATTTAAACA 196367 |||| || || ||||| || || |||| ||||||||| ||| || | |||| Sbjct 54943170 CCCGGATCCCCAAGATCCAGAAGCTGCTACAGGATTTCTTCAATGGTAAGGAGCTCAACA 54943111 Query 196368 AAACGATCAACCCGGATGAAGCAGTTGCTTATGGTGCGGCCGTTCAGGCTGCTATTCTCT 196427 | | |||||||| ||||| || || |||||||| || || || || || ||||| || Sbjct 54943110 AGAGCATCAACCCTGATGAGGCTGTGGCTTATGGCGCTGCTGTACAAGCAGCTAT--CCT 54943053 Query 196428 CAGGTGTTGACAA---TAATAACGTCCAAGATCTTCTGCTACTTGATGTTGCACCCGTAT 196484 || | | ||||| | | || || || ||||| ||||| | ||||| | || | | Sbjct 54943052 CATG-GGAGACAAGTCTGAGAATGTGCAGGATCTGCTGCTGTTGGATGTCACCCCTCTGT 54942994 Query 196485 CCCTGGGTCTTGAAACAGCGGGTGGTGTTATGACTAAAATTATTGATAGGAACACAACTA 196544 ||||||| | || || || || || || |||||| | || | | ||||| || | Sbjct 54942993 CCCTGGGCATCGAGACGGCTGGAGGCGTGATGACTGCTCTCATCAAGCGCAACACCACCA 54942934 Query 196545 TTCCGACTAAGAAGGAACAAGTCTTTTCAACGTATTCCGATAATCA-ACCAGGTGTTCAT 196603 | || || || | || ||| | || || || || || || | || | || | Sbjct 54942933 TCCCCACCAAACAAACTCAGACCTTCACCACCTACTCAGACAACCAGAGCA-GCGTCCTG 54942875 Query 196604 ATTCAAGTATATGAAG--GAGAACGCTCCCGTG-CAAAGGATAACCATCTACTTGGAACT 196660 | || || ||||| | |||| ||| || ||| ||||||| | | || || | Sbjct 54942874 GTCCAGGTGTATGAGGGTGAGAGGGCT---ATGACAAGGGATAACAACTTGCTGGGCAAG 54942818 Query 196661 TTCGATTTGACGGGGATTCCAGCTGCACCCAGAGGTGTTCCACAGATTAATGTTTGCTTC 196720 || || | || || || || | |||||||| || || || ||||| | || || Sbjct 54942817 TTTGACCTAACAGGCATCCCCCCAGCACCCAGGGGAGTCCCCCAGATCGAGGTAACTTTT 54942758 Query 196721 GATATAGACGCAAATGGAATTCTAAACGTCACAGCTGAGGACAAGGCTTCTGGCAAATCT 196780 || || || || ||||| || || || |||| || | ||||||| | || || Sbjct 54942757 GACATCGATGCCAATGGTATCCTGAATGTCAGTGCCGTGGACAAGAGCACGGGTAAGGAG 54942698 Query 196781 GAAAAGATTGTGATTACCAATGACAAGGGGCGGCTTTCTAAGGAGGAAATTGAACGTATG 196840 | ||||| || ||||| |||||||| || || ||||| || ||||| |||||| Sbjct 54942697 AACAAGATCACCATCACCAACGACAAGGGTCGCCTCAGCAAGGACGACATTGACCGTATG 54942638 Query 196841 GTTCAAGATGCGGAAAAGTACAGGGAAGAAGACGA 196875 || ||||| || || ||||||| | ||| || || Sbjct 54942637 GTGCAAGAAGCAGAGAAGTACAAAGCAGAGGATGA 54942603 >seq17 Length=13820886 Score = 199 bits (220), Expect = 5e-46 Identities = 181/228 (79%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| ||||||||||| ||||| ||||| || |||||||| || || || ||| | Sbjct 1693939 ATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACTATCACTCTGGAAGTGGAGCCCAGT 1693998 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 ||||| || || ||| |||| |||||||| || |||||||||||||| || || || ||| Sbjct 1693999 GACACCATTGAGAACGTCAAGGCCAAGATCCAGGATAAGGAAGGCATCCCTCCTGACCAG 1694058 Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041 || | || || |||||||| || ||||| |||||||| |||||||| |||| |||||| Sbjct 1694059 CAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGTACCCTGTCTGACTACAAC 1694118 Query 172042 GTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGGT 172089 | || |||||||| ||||| |||||||| || | || ||||||||| Sbjct 1694119 ATCCAGAAGGAGTCAACTCTGCACCTTGTCCTGCGCCTGCGGGGTGGT 1694166 Score = 188 bits (208), Expect = 9e-43 Identities = 169/212 (80%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| |||||||| || ||||| || || || || |||||||| ||||| ||| | Sbjct 1693711 ATGCAGATCTTTGTCAAGACCCTGACGGGCAAGACCATCACCCTTGAGGTCGAGCCCAGT 1693770 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 ||||| || || ||| |||| |||||||| || |||||||||||||| || || || ||| Sbjct 1693771 GACACCATTGAGAACGTCAAGGCCAAGATCCAGGATAAGGAAGGCATCCCTCCTGACCAG 1693830 Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041 || | |||||||||||||| || ||||| |||||||| |||||||| |||| |||||| Sbjct 1693831 CAGAGGCTTATTTTTGCTGGCAAGCAGCTGGAAGATGGCCGTACCCTGTCTGACTACAAC 1693890 Query 172042 GTTCAAAAGGAGTCTACTCTACACCTTGTTCT 172073 | || ||||| |||||||| || ||||| || Sbjct 1693891 ATCCAGAAGGAATCTACTCTGCATCTTGTGCT 1693922 Score = 185 bits (204), Expect = 1e-41 Identities = 177/227 (78%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| ||||| ||||| ||||| ||||| || || |||||||| ||||| ||| | Sbjct 1693483 ATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTTGAGGTGGAGCCCAGT 1693542 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 ||||| || || || |||| |||||||| ||||| ||||||||||| || || |||||| Sbjct 1693543 GACACCATTGAGAATGTCAAGGCCAAGATCCAAGACAAGGAAGGCATCCCTCCTGATCAG 1693602 Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041 || | || ||||| ||||| || ||||| |||||||| |||||||| |||| |||||| Sbjct 1693603 CAGAGGCTGATTTTCGCTGGGAAGCAGCTGGAAGATGGCCGTACCCTGTCTGACTACAAC 1693662 Query 172042 GTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGG 172088 | || || || || ||||| ||||| || || | || |||||||| Sbjct 1693663 ATCCAGAAAGAATCCACTCTGCACCTGGTGCTGCGCCTGCGGGGTGG 1693709 >seq25 Length=6808513 Score = 107 bits (118), Expect = 3e-18 Identities = 109/142 (77%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 195708 ATGCAGTTGTGACTGTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACG 195767 ||||||| |||||||| || || || |||| || || || || ||||| || || || | Sbjct 3075931 ATGCAGTAGTGACTGTCCCAGCCTATTTCAACGACTCCCAGCGCCAGGCAACGAAAGATG 3075872 Query 195768 CTGCTGCTATTGCGGGTCTAAACTGTCTTAGAATTATCAATGAACCAACAGCGGCTGCAA 195827 ||| ||||||| || || ||| || ||||| ||||| || || ||||| ||||| | Sbjct 3075871 CTGGAACTATTGCAGGGCTCAACGTGCTGAGAATCATCAACGAGCCCACAGCAGCTGCCA 3075812 Query 195828 TTGCTTATGGTCTGGACAAGAA 195849 |||| ||||| ||||||||||| Sbjct 3075811 TTGCCTATGGGCTGGACAAGAA 3075790 >seq20 Length=9871655 Score = 107 bits (118), Expect = 3e-18 Identities = 97/122 (80%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| |||||||| || ||||| ||||| || || |||||||| ||||||||| | Sbjct 6389748 ATGCAGATCTTTGTCAAGACCCTGACTGGCAAGACCATCACCCTTGAGGTTGAGCCCAGT 6389807 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 ||||| || || ||| | || |||||||| || || |||||||||||||| || || ||| Sbjct 6389808 GACACTATTGAAAACGTGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCAGACCAG 6389867 Query 171982 CA 171983 || Sbjct 6389868 CA 6389869 Score = 105 bits (116), Expect = 9e-18 Identities = 102/131 (78%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 171958 AAGGAAGGCATTCCACCCGATCAGCAACGACTTATTTTTGCTGGTAAACAGCTTGAAGAT 172017 |||||||||||||| || || ||||| | || || |||||||| || ||||| ||||| Sbjct 6390939 AAGGAAGGCATTCCCCCAGACCAGCAGAGGCTGATCTTTGCTGGGAAGCAGCTGGAAGAC 6390998 Query 172018 GGACGTACCCTCGCTGATTACAACGTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGG 172077 || || |||||| |||| |||||| | || || ||||| ||||| ||||| || || | Sbjct 6390999 GGGCGCACCCTCTCTGACTACAACATCCAGAAAGAGTCCACTCTTCACCTGGTGCTGCGC 6391058 Query 172078 CTTCGGGGTGG 172088 || ||||||| Sbjct 6391059 CTCAGGGGTGG 6391069 >seq18 Length=10486032 Score = 100 bits (110), Expect = 4e-16 Identities = 127/174 (73%), Gaps = 3/174 (2%) Strand=Plus/Plus Query 195814 AACAGCGGCTGCAATTGCTTATGGTCTGGACAAGAACAAGGACGAAGATAAAAATGTATT 195873 |||||| ||||| ||||||||||| |||||||||| ||| ||| || ||| | | Sbjct 866657 AACAGCTGCTGCCATTGCTTATGGACTGGACAAGAGAGAGGG---AGAGAAGAATATCCT 866713 Query 195874 GATCTTTGATCTCGGTGGTGGTACGTTTGATGTCTCACTTCTCAATATTGAAGGTGGTAT 195933 | ||||| || || ||||| || |||||||| || || || | ||||| || | Sbjct 866714 TGTATTTGACCTGGGCGGTGGGACTTTTGATGTGTCCCTCCTTACAATTGACAACGGAGT 866773 Query 195934 ATTCGAAGTAAAGGCTACTGCTGGTGATACTCATCTAGGTGGTGAAGATTTCGA 195987 || ||||| ||||||| |||||| ||||| || ||||||||||| || || Sbjct 866774 CTTTGAAGTTGTGGCTACTAATGGTGACACTCACCTGGGTGGTGAAGACTTTGA 866827 >seq30 Length=5101010 Score = 98.7 bits (108), Expect = 1e-15 Identities = 84/104 (81%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| ||||| ||||| ||||| || || ||||| |||||||||||||| ||| | Sbjct 3819593 ATGCAGATCTTCGTGAAGACCCTGACCGGCAAAACCATCACCCTCGAGGTGGAGCCCAAT 3819534 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGG 171965 ||||| ||||| ||| | ||||||||||| || || |||||||| Sbjct 3819533 GACACCATCGAGAACGTGAAAGCCAAGATCCAGGACAAGGAAGG 3819490 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657848626006000