Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Parus_20major_20[refseq_20GCF_5F001522545.2_202016-06-30]
1,675 sequences; 1,020,310,768 total letters
Query= NC_021858.1
Length=1908524
Score E
Sequences producing significant alignments: (Bits) Value
seq6 170 2e-36
seq1 125 9e-23
seq3 102 1e-15
seq24 86.0 8e-11
>seq6
Length=71365269
Score = 170 bits (188), Expect = 2e-36
Identities = 159/202 (79%), Gaps = 0/202 (0%)
Strand=Plus/Plus
Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402
|| ||||||| |||||| ||| | ||| |||||||| ||||||||||| |||| ||
Sbjct 45654629 GCTTGGCCAGCTCGCCGGGCAGCAGCAGCCGCACGGCCGTCTGGATCTCCCGCGACGTGA 45654688
Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462
| ||| ||||||||| |||||||||| || |||||| | ||||||| |||| |
Sbjct 45654689 TGGTGGAGCGCTTGTTGTAGTGCGCCAGGCGCGACGCCTCGCCGGCGATGCGCTCGAAGA 45654748
Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522
|||||||||| || |||||||||| ||| | |||| ||||||||| ||||||||
Sbjct 45654749 TGTCGTTGACGAAGGAGTTCATGATGCCCATGGCCTTGGACGAGATGCCCGTGTCGGGGT 45654808
Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544
|||||||||| |||||||||||
Sbjct 45654809 GCACCTGCTTCAGCACCTTGTA 45654830
Score = 170 bits (188), Expect = 2e-36
Identities = 159/202 (79%), Gaps = 0/202 (0%)
Strand=Plus/Minus
Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402
|| ||||||| |||||| ||| | ||| |||||||| ||||||||||| |||| ||
Sbjct 45701896 GCTTGGCCAGCTCGCCGGGCAGCAGCAGCCGCACGGCCGTCTGGATCTCCCGCGACGTGA 45701837
Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462
| ||| ||||||||| |||||||||| || |||||| | ||||||| |||| |
Sbjct 45701836 TGGTGGAGCGCTTGTTGTAGTGCGCCAGGCGCGACGCCTCGCCGGCGATGCGCTCGAAGA 45701777
Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522
|||||||||| || |||||||||| ||| | |||| ||||||||| ||||||||
Sbjct 45701776 TGTCGTTGACGAAGGAGTTCATGATGCCCATGGCCTTGGACGAGATGCCCGTGTCGGGGT 45701717
Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544
|||||||||| |||||||||||
Sbjct 45701716 GCACCTGCTTCAGCACCTTGTA 45701695
Score = 167 bits (184), Expect = 3e-35
Identities = 158/202 (78%), Gaps = 0/202 (0%)
Strand=Plus/Minus
Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402
|| ||||||| |||||| ||| | ||| |||||||| ||||||||||| |||| ||
Sbjct 45659911 GCTTGGCCAGCTCGCCGGGCAGCAGCAGCCGCACGGCCGTCTGGATCTCCCGCGACGTGA 45659852
Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462
| ||| ||||||||| |||||||||| || |||||| | ||||||| |||| |
Sbjct 45659851 TGGTGGAGCGCTTGTTGTAGTGCGCCAGGCGTGACGCCTCGCCGGCGATGCGCTCGAAGA 45659792
Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522
|||||||||| || |||||||||| ||| | |||| ||||||||| ||||||||
Sbjct 45659791 TGTCGTTGACGAAGGAGTTCATGATGCCCATGGCCTTGGACGAGATGCCCGTGTCGGGGT 45659732
Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544
| |||||||| |||||||||||
Sbjct 45659731 GTACCTGCTTCAGCACCTTGTA 45659710
Score = 125 bits (138), Expect = 9e-23
Identities = 150/204 (74%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402
|| ||||||| || || | | | |||||||||||| ||||||||||| || | ||
Sbjct 14491314 GCTTGGCCAGCTCTCCTGGGAGCAGCAGGCGCACGGCTGTCTGGATCTCCCGGGATGTGA 14491373
Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462
| ||| ||||||||| |||| ||||| ||| ||| || | ||||| || | |
Sbjct 14491374 TGGTGGAGCGCTTGTTGTAGTGGGCCAGGCGGGAGGCTTCTCCAGCAATGCGCTCAAAGA 14491433
Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522
|||| ||||| || |||||||||| ||| | |||| ||||||||| ||| || |
Sbjct 14491434 TGTCATTGACGAAGGAGTTCATGATGCCCATGGCCTTGGAGGAGATGCCAGTGTCAGGAT 14491493
Query 1254523 GCACCTGCTTGAGCACCTTGTAGA 1254546
| |||||||| |||||||||||||
Sbjct 14491494 GGACCTGCTTCAGCACCTTGTAGA 14491517
Score = 120 bits (132), Expect = 4e-21
Identities = 113/144 (78%), Gaps = 0/144 (0%)
Strand=Plus/Minus
Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402
|| ||||||| |||||| ||| | ||| |||||||| ||||||||||| |||| ||
Sbjct 45754973 GCTTGGCCAGCTCGCCGGGCAGCAGCAGCCGCACGGCCGTCTGGATCTCCCGCGACGTGA 45754914
Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462
| ||| ||||||||| |||||||||| || |||||| | ||||||| |||| |
Sbjct 45754913 TGGTGGAGCGCTTGTTGTAGTGCGCCAGGCGCGACGCCTCGCCGGCGATGCGCTCGAAGA 45754854
Query 1254463 TGTCGTTGACAAACGAGTTCATGA 1254486
|||||||||| || ||||||||||
Sbjct 45754853 TGTCGTTGACGAAGGAGTTCATGA 45754830
>seq1
Length=114059860
Score = 125 bits (138), Expect = 9e-23
Identities = 129/169 (76%), Gaps = 0/169 (0%)
Strand=Plus/Plus
Query 1628167 ACGATCTCGGTGCACAGGTTGGCCGACGTCGTCGTACCCAGGTTCTGCTGGTTGGTGGTC 1628226
||||||||||||||||||||| || | | || |||||||||||||||||| | ||
Sbjct 24015 ACGATCTCGGTGCACAGGTTGCTGCACTTGATGGTGCCCAGGTTCTGCTGGTTGCTCTTC 24074
Query 1628227 AGGTTGACGGCGTCCTTGTGGAGCATGTAGGGCGCGCCGGTCTCGATCTGCGCCGCGACG 1628286
|||| || |||||||| |||||||||||| | ||| |||||| |||| | | ||| |
Sbjct 24075 CTGTTGCAGGAGTCCTTGTAGAGCATGTAGGGGGTGCCAGTCTCGGTCTGGGACTCGATG 24134
Query 1628287 ATGGCCGACCAGATCTGGCGCGCGGGCACGACAGTCCGCGCGCGGCCCT 1628335
||||| |||||| ||| | || ||| || | ||| |||||||||
Sbjct 24135 ATGGCGTACCAGAGCTGCTGGGCCTTCACCACCCTGCGCACGCGGCCCT 24183
Score = 87.8 bits (96), Expect = 2e-11
Identities = 81/103 (79%), Gaps = 0/103 (0%)
Strand=Plus/Plus
Query 1630175 CGGCAAAGCCGATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGT 1630234
|||| | ||| ||||| || || ||||||||||| || || ||||| || || |||||||
Sbjct 26298 CGGCCAGGCCAATGCCCCCAGCAGACTTGGAGATCAGGGCACACTGCTTCAGGGTGTCGT 26357
Query 1630235 AGATGCCCTCGATCGAGTCGGCCTTCATGTCCACGAGAAAGCA 1630277
||||||| ||||| |||| |||||||| || || |||||
Sbjct 26358 AGATGCCTTCGATGCTGTCGTCCTTCATGCACAGCAGGAAGCA 26400
>seq3
Length=111636321
Score = 102 bits (112), Expect = 1e-15
Identities = 91/114 (80%), Gaps = 0/114 (0%)
Strand=Plus/Minus
Query 869830 CACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTGTACATCTCCCATACTTGCTG 869889
||||||||| || ||||||| |||||||||||||| |||||||||| ||| | | ||
Sbjct 98372131 CACCTCCTCCGCCGTCCAGAAGGAGGCCTCGGCCTTCTTGTACATCTGCCAGATGTCGTG 98372072
Query 869890 GTAGCGGATAGGGAAGAGGACAAAGCGGTTGGGGTTGTCGCGCAACAGGGGTTC 869943
||| |||| ||||||| ||| |||||| |||||| || |||| ||| || ||
Sbjct 98372071 GTACTGGATGGGGAAGATGACGAAGCGGCGGGGGTTCTCCCGCAGCAGCGGCTC 98372018
>seq24
Length=6655392
Score = 86.0 bits (94), Expect = 8e-11
Identities = 116/162 (72%), Gaps = 0/162 (0%)
Strand=Plus/Minus
Query 1852372 CTGGTACTCGGTGCCGCGCACAAACTCGAGTCCGCCCAGCGGCACGCCGATGTGCTGGAG 1852431
|||||| |||||||| || ||||| ||| |||| ||||| |||||| || ||
Sbjct 1828362 CTGGTAATCGGTGCCCCGGACAAATCTGAGCTTTTCCAGGGGCACCCCGATGCTCTCCAG 1828303
Query 1852432 CATGGCCTTGATGGCAAACTCGTACCAGCGGCACCGGTGTTCGACCAGGTCCCACGGCGT 1852491
|||||| |||||| || ||| || | ||| || | || | ||| ||||| || |
Sbjct 1828302 CATGGCTTTGATGACATGCTCATAGTAACGGGTGCGCAGCTCCAGCAGCTCCCAGGGAGC 1828243
Query 1852492 CTTGCCGTTGTCGAGGTGGGCGTGCACGTCGGCAAAGAGGAT 1852533
||| |||||| |||| ||||| | ||| |||||||||||
Sbjct 1828242 CTTCATGTTGTCCAGGTAAGCGTGGAGGTCAGCAAAGAGGAT 1828201
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 6107001741655975
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |