Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parus_20major_20[refseq_20GCF_5F001522545.2_202016-06-30] 1,675 sequences; 1,020,310,768 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq6 215 8e-50 seq2 143 4e-28 seq3 109 9e-18 seq1 105 1e-16 seq24 86.0 1e-10 >seq6 Length=71365269 Score = 215 bits (238), Expect = 8e-50 Identities = 194/244 (80%), Gaps = 0/244 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||| |||||||| ||||| || ||||||||| ||||||| |||||| ||| Sbjct 45654590 TGTACTTGGTGACAGCCTTGGTGCCCTCGGACACGGCGTGCTTGGCCAGCTCGCCGGGCA 45654649 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | ||| |||||||| ||||||||||| || | ||| ||| ||||||||| | Sbjct 45654650 GCAGCAGCCGCACGGCCGTCTGGATCTCCCGCGACGTGATGGTGGAGCGCTTGTTGTAGT 45654709 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 |||||||||| |||||| | ||||||| |||| ||||||||||| || ||||||| Sbjct 45654710 GCGCCAGGCGCGACGCCTCGCCGGCGATGCGCTCGAAGATGTCGTTGACGAAGGAGTTCA 45654769 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | ||| ||||||||| |||||||||||||||||| |||||||||| Sbjct 45654770 TGATGCCCATGGCCTTGGACGAGATGCCCGTGTCGGGGTGCACCTGCTTCAGCACCTTGT 45654829 Query 1485710 AAAC 1485713 | || Sbjct 45654830 ACAC 45654833 Score = 215 bits (238), Expect = 8e-50 Identities = 194/244 (80%), Gaps = 0/244 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||| |||||||| ||||| || ||||||||| ||||||| |||||| ||| Sbjct 45701935 TGTACTTGGTGACAGCCTTGGTGCCCTCGGACACGGCGTGCTTGGCCAGCTCGCCGGGCA 45701876 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | ||| |||||||| ||||||||||| || | ||| ||| ||||||||| | Sbjct 45701875 GCAGCAGCCGCACGGCCGTCTGGATCTCCCGCGACGTGATGGTGGAGCGCTTGTTGTAGT 45701816 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 |||||||||| |||||| | ||||||| |||| ||||||||||| || ||||||| Sbjct 45701815 GCGCCAGGCGCGACGCCTCGCCGGCGATGCGCTCGAAGATGTCGTTGACGAAGGAGTTCA 45701756 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | ||| ||||||||| |||||||||||||||||| |||||||||| Sbjct 45701755 TGATGCCCATGGCCTTGGACGAGATGCCCGTGTCGGGGTGCACCTGCTTCAGCACCTTGT 45701696 Query 1485710 AAAC 1485713 | || Sbjct 45701695 ACAC 45701692 Score = 214 bits (236), Expect = 3e-49 Identities = 201/256 (79%), Gaps = 0/256 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||| |||||||| ||||| || ||||||||| ||||||| |||||| ||| Sbjct 45659950 TGTACTTGGTGACAGCCTTGGTGCCCTCGGACACGGCGTGCTTGGCCAGCTCGCCGGGCA 45659891 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | ||| |||||||| ||||||||||| || | ||| ||| ||||||||| | Sbjct 45659890 GCAGCAGCCGCACGGCCGTCTGGATCTCCCGCGACGTGATGGTGGAGCGCTTGTTGTAGT 45659831 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 |||||||||| |||||| | ||||||| |||| ||||||||||| || ||||||| Sbjct 45659830 GCGCCAGGCGTGACGCCTCGCCGGCGATGCGCTCGAAGATGTCGTTGACGAAGGAGTTCA 45659771 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | ||| ||||||||| ||||||||| |||||||| |||||||||| Sbjct 45659770 TGATGCCCATGGCCTTGGACGAGATGCCCGTGTCGGGGTGTACCTGCTTCAGCACCTTGT 45659711 Query 1485710 AAACAAAGGACGAGTA 1485725 | || || |||||| Sbjct 45659710 ACACGTAGATCGAGTA 45659695 Score = 187 bits (206), Expect = 4e-41 Identities = 195/256 (76%), Gaps = 0/256 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||| |||||||| |||||||||||||||||| ||||||| || || | | Sbjct 14491275 TGTACTTGGTGACAGCCTTGGTGCCCTCTGAGACGGCGTGCTTGGCCAGCTCTCCTGGGA 14491334 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | |||||||||||| ||||||||||| |||| ||| ||| ||||||||| | Sbjct 14491335 GCAGCAGGCGCACGGCTGTCTGGATCTCCCGGGATGTGATGGTGGAGCGCTTGTTGTAGT 14491394 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | ||||||||| ||| || | ||||| || | ||||| ||||| || ||||||| Sbjct 14491395 GGGCCAGGCGGGAGGCTTCTCCAGCAATGCGCTCAAAGATGTCATTGACGAAGGAGTTCA 14491454 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | ||| ||||||||| ||| || || |||||||| |||||||||| Sbjct 14491455 TGATGCCCATGGCCTTGGAGGAGATGCCAGTGTCAGGATGGACCTGCTTCAGCACCTTGT 14491514 Query 1485710 AAACAAAGGACGAGTA 1485725 | ||| || ||||| Sbjct 14491515 AGACATAGATGGAGTA 14491530 Score = 165 bits (182), Expect = 1e-34 Identities = 147/184 (80%), Gaps = 0/184 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||| |||||||| ||||| || ||||||||| ||||||| |||||| ||| Sbjct 45755012 TGTACTTGGTGACAGCCTTGGTGCCCTCGGACACGGCGTGCTTGGCCAGCTCGCCGGGCA 45754953 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | ||| |||||||| ||||||||||| || | ||| ||| ||||||||| | Sbjct 45754952 GCAGCAGCCGCACGGCCGTCTGGATCTCCCGCGACGTGATGGTGGAGCGCTTGTTGTAGT 45754893 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 |||||||||| |||||| | ||||||| |||| ||||||||||| || ||||||| Sbjct 45754892 GCGCCAGGCGCGACGCCTCGCCGGCGATGCGCTCGAAGATGTCGTTGACGAAGGAGTTCA 45754833 Query 1485650 TGAT 1485653 |||| Sbjct 45754832 TGAT 45754829 Score = 122 bits (134), Expect = 1e-21 Identities = 105/130 (81%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||| |||||||| ||||| || ||||||||| ||||||| |||||| ||| Sbjct 45772182 TGTACTTGGTGACAGCCTTGGTGCCCTCGGACACGGCGTGCTTGGCCAGCTCGCCGGGCA 45772241 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | ||| |||||||| ||||||||||| || | ||| ||| ||||||||| | Sbjct 45772242 GCAGCAGCCGCACGGCCGTCTGGATCTCCCGCGACGTGATGGTGGAGCGCTTGTTGTAGT 45772301 Query 1485590 GCGCCAGGCG 1485599 |||||||||| Sbjct 45772302 GCGCCAGGCG 45772311 Score = 91.5 bits (100), Expect = 2e-12 Identities = 68/80 (85%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||| |||||||| ||||| || ||||||||| ||||||| |||||| ||| Sbjct 45788760 TGTACTTGGTGACAGCCTTGGTGCCCTCGGACACGGCGTGCTTGGCCAGCTCGCCGGGCA 45788819 Query 1485530 TGATCAGGCGCACGGCGGTC 1485549 | ||| |||||||| ||| Sbjct 45788820 GCAGCAGCCGCACGGCCGTC 45788839 >seq2 Length=150265477 Score = 143 bits (158), Expect = 4e-28 Identities = 170/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||| |||||||| ||||| |||||||||||| ||||||| || ||| ||| Sbjct 1227493 TGTACTTGGTGACAGCCTTGGTGCCCTCGGAGACGGCGTGCTTGGCCAGCTCTCCGGGCA 1227552 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | || | || || ||||| | ||| ||| ||| ||| ||| || | | | || | Sbjct 1227553 GCAGGAGCCTGACTGCCGTCTGCACCTCCCGGCTGCTGATGGTGGCACGGTGGCT-GTAC 1227611 Query 1485590 -GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTC 1485648 | |||||||| |||||| | | | | | || | |||||| |||||||| |||||| Sbjct 1227612 TGGGCCAGGCGTGAGGCCTCCAAGGCCAGGTGCTCAAACATGTCATTGACAAAGGAGTTC 1227671 Query 1485649 ATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGC 1485696 ||||| ||| | ||| ||||||| ||| ||| |||||||||||| Sbjct 1227672 ATGATGCTCATGGCCTTGGAGGAGATGGCCAGGTCAGGGTGCACCTGC 1227719 >seq3 Length=111636321 Score = 109 bits (120), Expect = 9e-18 Identities = 92/113 (81%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 796303 ACCTCCTCGGCGGTCCAAAAGGAGGCCTCGGCCTTTTTGTACATCTCCCATATCCGTTGG 796362 |||||||| || ||||| ||||||||||||||||| |||||||||| ||| || ||| Sbjct 98372130 ACCTCCTCCGCCGTCCAGAAGGAGGCCTCGGCCTTCTTGTACATCTGCCAGATGTCGTGG 98372071 Query 796363 TAGCGGATGGGGAACAGAACAAAGCGATTGGGGTTCTCGCGTAGCAGCGGCTC 796415 || |||||||||| | || ||||| ||||||||| || ||||||||||| Sbjct 98372070 TACTGGATGGGGAAGATGACGAAGCGGCGGGGGTTCTCCCGCAGCAGCGGCTC 98372018 >seq1 Length=114059860 Score = 105 bits (116), Expect = 1e-16 Identities = 102/131 (78%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 2071579 ACGACCTCGGTGCACAGGTTGGCCGACATCGTGGTGCCCAGGTTCTGCTGGTTGCTGGTC 2071638 |||| |||||||||||||||| || | ||||||||||||||||||||||||| || Sbjct 24015 ACGATCTCGGTGCACAGGTTGCTGCACTTGATGGTGCCCAGGTTCTGCTGGTTGCTCTTC 24074 Query 2071639 AGGTTGACGGCGTCCTTGTGCAGCATGTAGGGCGCACCCGTCTCGATCTGCGCCGTGACG 2071698 |||| || |||||||| ||||||||||| | || |||||| |||| | | || | Sbjct 24075 CTGTTGCAGGAGTCCTTGTAGAGCATGTAGGGGGTGCCAGTCTCGGTCTGGGACTCGATG 24134 Query 2071699 ATGGCCGACCA 2071709 ||||| |||| Sbjct 24135 ATGGCGTACCA 24145 Score = 87.8 bits (96), Expect = 3e-11 Identities = 116/157 (74%), Gaps = 3/157 (2%) Strand=Plus/Plus Query 2070052 GCCGCATGGTAGATCGTCTCAAAGATGGTGC-GGTTGAGGCGACGCGCGCCGGCGCTCTC 2070110 ||| | | ||| || ||||| |||||| ||| |||||||||| | || |||||||||| Sbjct 22331 GCCCCGTAGTAAATGGTCTCGAAGATG-TGCTGGTTGAGGCGCTGAGCCTCGGCGCTCTC 22389 Query 2070111 CCACGGCAGGTCCATCATGGCAAACGCGTCGGCCAGGCCCTGCACGCCGACGCCCATCGG 2070170 | || | ||| | | || ||||| ||||||||||||||||||| ||| || || Sbjct 22390 GAAGGGGAACCTCATGAGGATGAAGGCGTCAGCCAGGCCCTGCACGCCGATGCCGATGGG 22449 Query 2070171 CCGGTGGCGCAGGTTCGAGTGCCGGGCCT-CGGGCAC 2070206 ||||| || |||| ||| || ||||| |||| || Sbjct 22450 GCGGTGCCGGCGGTTGGAGCGCTCGGCCTGCGGGGAC 22486 >seq24 Length=6655392 Score = 86.0 bits (94), Expect = 1e-10 Identities = 121/170 (71%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 2411714 GCTGGTAATCGCTGCCGCGCACAAATTCGAGACGATCCAGCGGGACGCCAATGTGCTGGA 2411773 ||||||||||| |||| || |||||| ||| ||||| || || || ||| || | Sbjct 1828363 GCTGGTAATCGGTGCCCCGGACAAATCTGAGCTTTTCCAGGGGCACCCCGATGCTCTCCA 1828304 Query 2411774 GCATGGCCTTGATGGCAAACTCGTACCAGCGGCACCGGTGCTCGACGAGGTCCCACGGCG 2411833 ||||||| |||||| || ||| || | ||| || |||| | || ||||| || | Sbjct 1828303 GCATGGCTTTGATGACATGCTCATAGTAACGGGTGCGCAGCTCCAGCAGCTCCCAGGGAG 1828244 Query 2411834 TCTTGCCATTGTCGAGGTGGGCGTGCACGTCGGCAAAGAGGATCCTCACC 2411883 ||| ||||| |||| ||||| | ||| ||||||||||| ||||| Sbjct 1828243 CCTTCATGTTGTCCAGGTAAGCGTGGAGGTCAGCAAAGAGGATTGTCACC 1828194 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7916068222610325