Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parus_20major_20[refseq_20GCF_5F001522545.2_202016-06-30] 1,675 sequences; 1,020,310,768 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq17 123 2e-23 seq20 86.0 4e-12 >seq17 Length=13820886 Score = 123 bits (136), Expect = 2e-23 Identities = 167/231 (72%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 34749 TTCCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCG 34808 |||| |||| || | ||| |||||||| | ||| || ||||| ||||| ||||| | Sbjct 1693711 TTCCACCCCGCAGGCGCAGCACCAGGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCAG 1693652 Query 34809 ATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCG 34868 | ||| | || |||| ||||| ||||| || ||||| ||||| | ||||| || | | Sbjct 1693651 ACAGGGTACGGCCATCTTCCAGCTGCTTCCCAGCGAAAATCAGCCTCTGCTGATCAGGAG 1693592 Query 34869 GCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTC 34926 | | || |||||||| | || || ||||| || || || | ||| ||| ||| Sbjct 1693591 GGATGCCTTCCTTGTCTTGGATCTTGGCCTTGAC--ATTCTCAATGGTGTCACTGGGCTC 1693534 Query 34927 GACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || |||| ||| |||||||| || || |||||||| || ||||||||||| Sbjct 1693533 CACCTCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 1693483 Score = 120 bits (132), Expect = 2e-22 Identities = 141/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 34787 TCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAG 34846 |||||||| ||||| ||||| || ||| | || |||| ||||| ||||| || || || Sbjct 1693901 TCCTTCTGGATGTTGTAGTCAGACAGGGTACGGCCATCTTCCAGCTGCTTGCCAGCAAAA 1693842 Query 34847 ATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGAT 34906 || || | |||||||| | || | || ||||| || | || || |||||| Sbjct 1693841 ATAAGCCTCTGCTGGTCAGGAGGGATGCCTTCCTTATCCTGGATCTTGGCCTTGACGTTC 1693782 Query 34907 GCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACA 34966 | || | ||| ||| |||||| |||| ||| |||||||| ||||| |||||||| ||| Sbjct 1693781 TCAATGGTGTCACTGGGCTCGACCTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTGACA 1693722 Query 34967 AAGATCTGCAT 34977 ||||||||||| Sbjct 1693721 AAGATCTGCAT 1693711 Score = 118 bits (130), Expect = 7e-22 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 34748 TTTCCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCC 34807 || || |||| || | |||||| ||||| | || ||||||||| ||||| ||||| Sbjct 1694168 TTACCACCCCGCAGGCGCAGGACAAGGTGCAGAGTTGACTCCTTCTGGATGTTGTAGTCA 1694109 Query 34808 GATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGC 34867 || ||| | || |||| ||||| ||||| || || |||||||| | |||||||| | Sbjct 1694108 GACAGGGTACGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGA 1694049 Query 34868 GGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCG 34927 || | || ||||| || | || || |||||| | || | ||| ||| ||| Sbjct 1694048 GGGATGCCTTCCTTATCCTGGATCTTGGCCTTGACGTTCTCAATGGTGTCACTGGGCTCC 1693989 Query 34928 ACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || || | || || ||||| || || |||||||| |||||||||||||| Sbjct 1693988 ACTTCCAGAGTGATAGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 1693939 >seq20 Length=9871655 Score = 86.0 bits (94), Expect = 4e-12 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 34844 AAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACG 34903 |||||||| | ||||||||| | || | || |||||||| | || || || ||| Sbjct 6389881 AAGATCAGCCTCTGCTGGTCTGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTCACG 6389822 Query 34904 GATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTT 34963 | | || | ||| ||| ||| || |||| ||| |||||||| || || |||||||| Sbjct 6389821 TTTTCAATAGTGTCACTGGGCTCAACCTCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTG 6389762 Query 34964 ACAAAGATCTGCATG 34978 ||||||||||||||| Sbjct 6389761 ACAAAGATCTGCATG 6389747 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325686151286825