Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parus_20major_20[refseq_20GCF_5F001522545.2_202016-06-30] 1,675 sequences; 1,020,310,768 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq17 165 2e-35 seq3 109 1e-18 seq20 89.7 1e-12 >seq17 Length=13820886 Score = 165 bits (182), Expect = 2e-35 Identities = 174/229 (76%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | || ||||| || | ||||||||| || || ||||| || || || |||| Sbjct 1694167 TACCACCCCGCAGGCGCAGGACAAGGTGCAGAGTTGACTCCTTCTGGATGTTGTAGTCAG 1694108 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | || | | || ||||| || || || ||||||||||| || || || || || |||| Sbjct 1694107 ACAGGGTACGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGAG 1694048 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || ||||||||||| || ||||| || || || || ||||| || ||| | || || | Sbjct 1694047 GGATGCCTTCCTTATCCTGGATCTTGGCCTTGACGTTCTCAATGGTGTCACTGGGCTCCA 1693988 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||||| ||| || |||||||| |||| ||||| ||||| |||||||| Sbjct 1693987 CTTCCAGAGTGATAGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 1693939 Score = 159 bits (176), Expect = 7e-34 Identities = 172/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 |||||||| | ||||| || | |||||||||||||| ||||| || || || ||||| Sbjct 1693937 CCTCCTCTGAGGCGCAGCACAAGATGCAGAGTAGATTCCTTCTGGATGTTGTAGTCAGAC 1693878 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | | || ||||| || || || |||||||| || || || || || || ||||| Sbjct 1693877 AGGGTACGGCCATCTTCCAGCTGCTTGCCAGCAAAAATAAGCCTCTGCTGGTCAGGAGGG 1693818 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || ||||||||||| || ||||| || || || || ||||| || ||| | || || || Sbjct 1693817 ATGCCTTCCTTATCCTGGATCTTGGCCTTGACGTTCTCAATGGTGTCACTGGGCTCGACC 1693758 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 || | || || |||||||| |||| ||||| ||||| ||||||||| Sbjct 1693757 TCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTGACAAAGATCTGCATT 1693710 Score = 156 bits (172), Expect = 8e-33 Identities = 166/219 (76%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655 ||||| || | ||||||||| ||||||||||| || || || ||||| || | | || Sbjct 1693697 CGCAGCACCAGGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCAGACAGGGTACGGCCA 1693638 Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 ||||| || || || ||||| || || || || || ||||| ||||| || |||||||| Sbjct 1693637 TCTTCCAGCTGCTTCCCAGCGAAAATCAGCCTCTGCTGATCAGGAGGGATGCCTTCCTTG 1693578 Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATC 82775 ||||| ||||| || || ||||| ||||| || ||| | || || || || | || || Sbjct 1693577 TCTTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCCACCTCAAGGGTGATG 1693518 Query 82776 GTCTTGCCTGTCAACGTCTTTACAAATATCTGCATTATT 82814 |||||||| |||| ||||| || || ||||||||| || Sbjct 1693517 GTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCATTTTT 1693479 >seq3 Length=111636321 Score = 109 bits (120), Expect = 1e-18 Identities = 122/163 (75%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 60149 GCATTATGGTGGTACTATATATCTAAAGGTATAGAATACTTAGATACGGTGTTTTTCATA 60208 || ||||||||||| ||| | |||||||| || || || || ||||| || || ||||| Sbjct 80860245 GCTTTATGGTGGTATTATGTTTCTAAAGGAATTGAGTATTTGGATACAGTATTCTTCATC 80860304 Query 60209 CTTAGGAAAAAGTTTAATCAGGTTAGTTTTTTACACGTATATCATCATTTTACTATGTTT 60268 || ||||| || ||||| || ||||||| | || || ||||| ||||| || ||||| Sbjct 80860305 CTGAGGAAGAAATTTAACCAAATTAGTTTCCTTCATGTCTATCACCATTTCACCATGTTC 80860364 Query 60269 ACTTTAGGATGGGTAGGCATTAAATGGTTTGCCGGAGGTCAAG 60311 || || | ||| | || || || ||| |||| || || |||| Sbjct 80860365 ACCTTGTGGTGGATTGGTATCAAGTGGGTTGCAGGTGGACAAG 80860407 Score = 91.5 bits (100), Expect = 3e-13 Identities = 100/133 (75%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 60310 AGCATTTTTCGGAGCTCAGTTGAATTCCTTAATCCATGTTATTATGTATACTTATTATGG 60369 ||| |||||||||||||| ||||| | || || ||||| |||||||| | |||||||| Sbjct 80862599 AGCTTTTTTCGGAGCTCAAATGAATGCATTTATACATGTCATTATGTACATGTATTATGG 80862658 Query 60370 TATGGCGGCGTGTGGACCTATGTTTAAAAAGTATTTATGGTGGAAGCGTTATCTTACTAT 60429 | || || || || |||| ||| | || || | |||||||| || ||| | || || Sbjct 80862659 ATTAGCAGCTTGCGGCCCTAAATTTCAGAAATACCTGTGGTGGAAACGGTATTTGACCAT 80862718 Query 60430 AATGCAATTGTTA 60442 | |||||||| || Sbjct 80862719 ATTGCAATTGGTA 80862731 Score = 84.2 bits (92), Expect = 4e-11 Identities = 103/141 (73%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 60443 CAATTCCATATAGCTATAGGACATACCGCTATGTCCATTTACATAGATTGTCCGTTTCCA 60502 || |||||| | |||| || || || || |||| ||||| || |||||||| || || Sbjct 80863241 CAGTTCCATGTGACTATTGGCCACACAGCCTTGTCTATTTATATTGATTGTCCTTTCCCT 80863300 Query 60503 AAATGGACACAATGGTCAGTTATCATTTATTCTATTACTTTTATATTACTGTTTGGTAAC 60562 ||||||| || ||| || || | ||| || | || || || || |||||||||||| Sbjct 80863301 AAATGGATGCACTGGGGTGTCATTTTCTATGCTGTCACCTTCATTTTCCTGTTTGGTAAC 80863360 Query 60563 TTCTATTTTAGAACATACAAG 60583 ||||| | | | ||||| ||| Sbjct 80863361 TTCTACTATCGGACATATAAG 80863381 >seq20 Length=9871655 Score = 89.7 bits (98), Expect = 1e-12 Identities = 91/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655 ||||| || | ||| ||||| || |||||||| || || || ||||| || | | ||| Sbjct 6391057 CGCAGCACCAGGTGAAGAGTGGACTCTTTCTGGATGTTGTAGTCAGAGAGGGTGCGCCCG 6390998 Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714 ||||| || || || ||||||||||| || || || || ||||| || || |||||||| Sbjct 6390997 TCTTCCAGCTGCTTCCCAGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATGCCTTCCTT 6390939 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981806129067825