Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parus_20major_20[refseq_20GCF_5F001522545.2_202016-06-30] 1,675 sequences; 1,020,310,768 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq17 143 3e-29 seq20 95.1 1e-14 seq1 87.8 2e-12 seq30 84.2 2e-11 >seq17 Length=13820886 Score = 143 bits (158), Expect = 3e-29 Identities = 152/198 (77%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 ||||| |||||||| || ||||| || || || | | | || || |||||||| || Sbjct 1693679 GTGGATTCTTTCTGGATGTTGTAGTCAGACAGGGTACGGCCA-TCTTCCAGCTGCTTCCC 1693621 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| |||| |||| |||||| || |||||||||||||||||||| |||||| ||| Sbjct 1693620 AGCGAAAATCAGCCTCTGCTGATCAGGAGGGATGCCTTCCTTGTCTTGGATCTTGGCCTT 1693561 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | ||||| ||||| |||||||||| || | ||||| ||| ||||| ||||| || Sbjct 1693560 GACATTCTCAATGGTGTCACTGGGCTCCACCTCAAGGGTGATGGTCTTGCCAGTCAGGGT 1693501 Query 133643 TTTTACGAAAATCTGCAT 133660 || ||||| |||||||| Sbjct 1693500 CTTCACGAAGATCTGCAT 1693483 Score = 127 bits (140), Expect = 2e-24 Identities = 121/155 (78%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 133506 TCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTG 133565 || || ||||||||||| || |||| |||| ||||||||| ||||||||||||||||| Sbjct 1693865 TCTTCCAGCTGCTTGCCAGCAAAAATAAGCCTCTGCTGGTCAGGAGGGATGCCTTCCTTA 1693806 Query 133566 TCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACG 133625 || |||||| ||||| | ||||| ||||| ||||||| || || | ||||| | Sbjct 1693805 TCCTGGATCTTGGCCTTGACGTTCTCAATGGTGTCACTGGGCTCGACCTCAAGGGTGATG 1693746 Query 133626 GTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCAT 133660 || ||||| ||||| || || || || |||||||| Sbjct 1693745 GTCTTGCCCGTCAGGGTCTTGACAAAGATCTGCAT 1693711 Score = 120 bits (132), Expect = 3e-22 Identities = 147/198 (74%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 || ||||| ||||| || ||||| || || || | | | || || ||||||||||| Sbjct 1694135 GTTGACTCCTTCTGGATGTTGTAGTCAGACAGGGTACGGCCA-TCTTCCAGCTGCTTGCC 1694077 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || | || |||| ||||||||| ||||||||||||||||| || |||||| ||| Sbjct 1694076 AGCAAAGATCAGCCTCTGCTGGTCAGGAGGGATGCCTTCCTTATCCTGGATCTTGGCCTT 1694017 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | ||||| ||||| |||||||||| || | |||| || ||||| ||||| || Sbjct 1694016 GACGTTCTCAATGGTGTCACTGGGCTCCACTTCCAGAGTGATAGTCTTGCCAGTCAGGGT 1693957 Query 133643 TTTTACGAAAATCTGCAT 133660 || || || |||||||| Sbjct 1693956 CTTCACAAAGATCTGCAT 1693939 >seq20 Length=9871655 Score = 95.1 bits (104), Expect = 1e-14 Identities = 100/132 (76%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 133530 ATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTGAGCTGC 133589 || |||| ||||||||| || || |||||||||||||| |||||| ||| | | Sbjct 6389878 ATCAGCCTCTGCTGGTCTGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTCACGTTT 6389819 Query 133590 TCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTTTTTACG 133649 |||| ||||| ||||||| || || | ||||| ||| ||||| ||||| || || || Sbjct 6389818 TCAATAGTGTCACTGGGCTCAACCTCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTGACA 6389759 Query 133650 AAAATCTGCATG 133661 || ||||||||| Sbjct 6389758 AAGATCTGCATG 6389747 >seq1 Length=114059860 Score = 87.8 bits (96), Expect = 2e-12 Identities = 129/183 (70%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 148499 GCCCTCGTACGAGCTGTACGGTCCGTGCGCCGCCGCCAGTTCGCAGCTCGCCTCGAGCGC 148558 ||||||||| | | || || |||||| || ||||| || ||||| ||||| || || Sbjct 22273 GCCCTCGTAGGTGTCATAGGGGCCGTGCTCCCTGGCCAGCTCACAGCTGGCCTCCAGGGC 22332 Query 148559 GCCGTAGTAAATCGTCTCGGCAATTTGCCTGTTGAGCAGCGCCGCCGACTCGCTTTCGTA 148618 ||||||||||| |||||| || ||| |||||| || ||| |||| ||| | Sbjct 22333 CCCGTAGTAAATGGTCTCGAAGATGTGCTGGTTGAGGCGCTGAGCCTCGGCGCTCTCGAA 22392 Query 148619 CGGCATACGCAGCCGCACAAACGCGTCGGCAAGGCCCTGTACGCCCACGCCAATGGGCCG 148678 || | | || | | || ||||| || |||||||| ||||| | ||| ||||| || Sbjct 22393 GGGGAACCTCATGAGGATGAAGGCGTCAGCCAGGCCCTGCACGCCGATGCCGATGGGGCG 22452 Query 148679 GTG 148681 ||| Sbjct 22453 GTG 22455 >seq30 Length=5101010 Score = 84.2 bits (92), Expect = 2e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 133557 CCTTCCTTGTCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCG 133616 ||||||||||| |||||| || | | ||| | ||||| |||||||||| ||| Sbjct 3819490 CCTTCCTTGTCCTGGATCTTGGCTTTCACGTTCTCGATGGTGTCATTGGGCTCCACCTCG 3819549 Query 133617 ACGGTGACGGTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCAT 133660 | ||||| ||||||||||||||| || || ||||| |||||||| Sbjct 3819550 AGGGTGATGGTTTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 3819593 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483410678377000