Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parus_20major_20[refseq_20GCF_5F001522545.2_202016-06-30] 1,675 sequences; 1,020,310,768 total letters Query= NC_024696.1 Length=180800 Score E Sequences producing significant alignments: (Bits) Value seq3 159 4e-34 seq12 102 9e-17 >seq3 Length=111636321 Score = 159 bits (176), Expect = 4e-34 Identities = 464/703 (66%), Gaps = 15/703 (2%) Strand=Plus/Plus Query 176946 GCCAGTTCTATAGGGGACGTGTAGTCGTTCACGTGAATGAAAGCGTCTCCCGGGACGTAA 177005 ||||| ||| | ||||| | || | |||||| ||||||| |||| | || | |||| Sbjct 74492965 GCCAGCTCTCTGGGGGAGAGAAAATCTTCCACGTGTATGAAAGAGTCTGCTGGAATGTAA 74493024 Query 177006 TTTTCGTAATTCTCTCTCGATGTTCCGAGTACTATGGGTACCGCACCTGCCATAAGAGAT 177065 || || ||||| ||||| || | || ||||| | ||||| | || |||| ||||| Sbjct 74493025 TTCTCATAATTTTCTCTGGAAGGGCCCAGTACAACTGGTACTGATCCAGCCAGAAGAGCA 74493084 Query 177066 CGGTAGAGTTTTTCGGTAATATAGTCCCTGTGTACGGAGTTCTCAAACGCGAGATAGAAT 177125 ||| ||||| || ||||| || || |||| | || || ||||| | || |||||| Sbjct 74493085 TTGTAAAGTTTCTCAGTAATGTAATCTTTGTGGATTGAATTTTCAAAGGAAAGGTAGAAT 74493144 Query 177126 TTACAGGA--AGATAGTAGCGGGATGAAGTCATCATCGGGTATATAATCTCCTACTACGT 177183 || ||||| ||||||| | | || |||| | ||| | || ||||| | | | Sbjct 74493145 TTGCAGGAGGAGATAGTTG--GAATCAAGTTTTTATCATTGACGTAGTCTCCGAAGGCTT 74493202 Query 177184 TCCCGTATACATGTATATCTATGTGTTTACTGAGCTCTAGGTAGTATCTCGA-TCTCACG 177242 ||||| || || || |||| ||| || ||||| ||| || || || || || Sbjct 74493203 GTCCGTAGGTGTGGATTTCAATGTATTTGCTAAGCTCGTTGTAATA-CTTGACTCGAGCG 74493261 Query 177243 TGGTCGTTGTTCCAATTGCTGACGACCCAGCAAACTAACTTGCTCTTTGCG-GGAACGGG 177301 || ||| |||||| || || || |||||||| || || || ||| || | || || Sbjct 74493262 TGCTCGGGGTTCCAGTTACTCACAACCCAGCAGACCAAGTT-CTCCTTACTTGGTAC--- 74493317 Query 177302 ATTCGATACT-AATGCAGTGTCTCTGAGCGTTAGTGATCCATAGGGCACGTGAATATCCG 177360 ||| | | || | | | | | | | | | || || ||||| || ||||| | Sbjct 74493318 -TTCAAACGTGAAGGAACTCGTACCAACCATCATGAAGCCGTAAGGCACCTGGATATCTG 74493376 Query 177361 AGTCGCGTCTGTACGTTAACGTGAGATTGAAAAGGTTTTCTATACCT-TGTTTGAAGGGG 177419 |||| || | ||| || | || || || ||||||| ||| || || | ||| || | Sbjct 74493377 AGTCACGCCGGTAAGTCAGGGTCAGGTTAAAAAGGTGTTCAATGCCACTCTTTTGTGGAG 74493436 Query 177420 CTGTTACTGGGCGATTCTAAGTTCATCCATATCCACTTTTGAAAGGTTGGTCTGGGTTCC 177479 ||| | | || || || ||||||||||| |||||||| || || | ||| |||| || | Sbjct 74493437 -TGTGAGTTGGAGACTCCAAGTTCATCCAAATCCACTTCTGGAACGGTGGCCTGGCTTGC 74493495 Query 177480 GTAGGTAGAGTATAAGGATCTATACTTATCTCTCTGTGGTGAAAGACTACGGCATTGGCT 177539 ||||| | || |||| || || |||||||| |||| || || |||| || | Sbjct 74493496 TGAGGTAAATTAGCCAGATCCCAGCTAATGTCTCTGTGATGAATGAGAACAGCATGGGAT 74493555 Query 177540 TTGTAATAAACAGATCTGTCTACGGTAACGTGACACGCACGTATGTTAAATCTGGAGCTA 177599 ||| ||| | || | ||| | || | || ||| || | || || || ||| Sbjct 74493556 CTGTTATATAGCGAGCGGTCAATAGTCAGATGGCACCCAGGGATATTGAACATGGTTTGG 74493615 Query 177600 CACGCATTTAGATCAAATGGGTGGCCGTAGGGCCACGTCCAGA 177642 || | ||||||| |||| || || | |||||| ||||| Sbjct 74493616 CAGGATGTTAGATCGAATGTCTGACCAAATGGCCACACCCAGA 74493658 >seq12 Length=20202851 Score = 102 bits (112), Expect = 9e-17 Identities = 239/356 (67%), Gaps = 6/356 (2%) Strand=Plus/Plus Query 162640 CGCACCATCTCTAGATTGGTCTTAAGGGGAAAGTCGGTGCCGCAGAGATTAATAACATAT 162699 || || ||||| ||||||||| | ||| |||||||||||||| || || | ||| Sbjct 4814201 CGGACTATCTCGCCATTGGTCTTGATGGGGAAGTCGGTGCCGCAAGTGTTGATGAGGTAT 4814260 Query 162700 TTCCACTTAACGCTGAGTCCGTA-CAGATCCTGTAGACAGTTCAGATCGGCCTGGACGCG 162758 |||| ||| | || | | ||| ||||| | ||||| || |||||||| | || Sbjct 4814261 CGCCACGGCACG-GGGCTCTGCAGCAGGTCCTGCATGCAGTTGAGGTCGGCCTGCAGCCG 4814319 Query 162759 ACTCCACGACGCGTACACGACGCTCTCCAACCTAGTGGCGACAAAGACATTGTCGAAACA 162818 ||| | || || || |||||||||| | |||| || ||||| ||| ||| || Sbjct 4814320 GGACCAGGCGGCATAGACCACGCTCTCCAGGCGGCTGGCCACGAAGACGTTGGGGAAGCA 4814379 Query 162819 CGAAACTATCCCCATCACGGCCAGTGAGAA--CATCGGGTCCGCTTTCCTATCTACGTGT 162876 | | | || || ||||||| ||| | | || | ||| || || || || Sbjct 4814380 GGCAGCAATGGCCCGCACGGCCTCCTGGAAGGCGGCCGG--GGATTTGCTGTCCACATGG 4814437 Query 162877 ACGCAGTATAGATTCTGAGGGGCGTAGATGGCCCTCAGTAATCTCTCGAACATCTCTATC 162936 || ||||| | |||||| |||| ||||| || || ||| | | ||| ||||| || || Sbjct 4814438 ACACAGTACACATTCTGGGGGGAGTAGACGGACCGCAGGAGCCGCTCAAACATGTCGATT 4814497 Query 162937 TTATGGTGTACCACGATAGAATACGCTATGGGGAACTCAGCCTCCTCGCGACTGAG 162992 || | ||| | || || || || || |||||||| || |||||| | ||||| Sbjct 4814498 TTGTTGTGGATGACCATGGAGTAGGCGATGGGGAAGTCCTTCTCCTCCTGGCTGAG 4814553 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578419889080000