Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parus_20major_20[refseq_20GCF_5F001522545.2_202016-06-30] 1,675 sequences; 1,020,310,768 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq1 96.9 3e-15 seq17 87.8 2e-12 >seq1 Length=114059860 Score = 96.9 bits (106), Expect = 3e-15 Identities = 89/113 (79%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 147503 TGTACTGCACGATTTCGGCGCACAGGTTGCTGCATTTTATGACTCCCAAATTTTGCTGAT 147562 |||||| |||||| |||| ||||||||||||||| || ||| |||| || ||||| | Sbjct 24007 TGTACTCCACGATCTCGGTGCACAGGTTGCTGCACTTGATGGTGCCCAGGTTCTGCTGGT 24066 Query 147563 TGCTTTTCCGATTGCACGCGTCTTTGAAGAGCATGTACGGTCCGCCGGTCTCG 147615 |||| |||| ||||| | ||| ||| |||||||||| || ||| |||||| Sbjct 24067 TGCTCTTCCTGTTGCAGGAGTCCTTGTAGAGCATGTAGGGGGTGCCAGTCTCG 24119 >seq17 Length=13820886 Score = 87.8 bits (96), Expect = 2e-12 Identities = 137/196 (70%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 131928 TTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGG 131987 ||||||| || || ||||||||||| || |||||| |||||| ||||| || || | Sbjct 1694134 TTGACTCCTTCTGGATGTTGTAGTCAGACAGGGTACGGCCATCTTCCAGCTGCTTGCCAG 1694075 Query 131988 AATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCA 132047 | |||| || | ||| || || ||||| |||||||| ||||| || || || | Sbjct 1694074 CAAAGATCAGCCTCTGCTGGTCAGGAGGGATGCCTTCCTTATCCTGGATCTTGGCCTTGA 1694015 Query 132048 ACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 132107 | || | || || | ||||||||||| | || | || || |||||||| || | Sbjct 1694014 CGTTCTCAATGGTGTCACTGGGCTCCACTTCCAGAGTGATAGTCTTGCCAGTCAGGGTCT 1693955 Query 132108 TTATGAAAATCTGCAT 132123 | | || |||||||| Sbjct 1693954 TCACAAAGATCTGCAT 1693939 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476601220953000