Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parus_20major_20[refseq_20GCF_5F001522545.2_202016-06-30] 1,675 sequences; 1,020,310,768 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq6 188 1e-41 seq1 125 1e-22 seq2 109 8e-18 seq3 104 3e-16 >seq6 Length=71365269 Score = 188 bits (208), Expect = 1e-41 Identities = 180/229 (79%), Gaps = 6/229 (3%) Strand=Plus/Minus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||||| ||||||||||||||| || || |||| || |||| ||||| Sbjct 45654830 TACAAGGTGCTGAAGCAGGTGCACCCCGACAC-----GGGCATC-TCGTCCAAGGCCATG 45654777 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 ||||||||||| || ||||||||||| |||| ||||||| | |||||| ||| Sbjct 45654776 GGCATCATGAACTCCTTCGTCAACGACATCTTCGAGCGCATCGCCGGCGAGGCGTCGCGC 45654717 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||||| || |||||||||| ||| ||| |||| ||||||||||| |||||||| Sbjct 45654716 CTGGCGCACTACAACAAGCGCTCCACCATCACGTCGCGGGAGATCCAGACGGCCGTGCGG 45654657 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||| | ||| |||||| ||||||| ||||||||| ||||||||||||| Sbjct 45654656 CTGCTGCTGCCCGGCGAGCTGGCCAAGCACGCCGTGTCCGAGGGCACCA 45654608 Score = 188 bits (208), Expect = 1e-41 Identities = 180/229 (79%), Gaps = 6/229 (3%) Strand=Plus/Plus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||||| ||||||||||||||| || || |||| || |||| ||||| Sbjct 45701695 TACAAGGTGCTGAAGCAGGTGCACCCCGACAC-----GGGCATC-TCGTCCAAGGCCATG 45701748 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 ||||||||||| || ||||||||||| |||| ||||||| | |||||| ||| Sbjct 45701749 GGCATCATGAACTCCTTCGTCAACGACATCTTCGAGCGCATCGCCGGCGAGGCGTCGCGC 45701808 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||||| || |||||||||| ||| ||| |||| ||||||||||| |||||||| Sbjct 45701809 CTGGCGCACTACAACAAGCGCTCCACCATCACGTCGCGGGAGATCCAGACGGCCGTGCGG 45701868 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||| | ||| |||||| ||||||| ||||||||| ||||||||||||| Sbjct 45701869 CTGCTGCTGCCCGGCGAGCTGGCCAAGCACGCCGTGTCCGAGGGCACCA 45701917 Score = 185 bits (204), Expect = 1e-40 Identities = 179/229 (78%), Gaps = 6/229 (3%) Strand=Plus/Plus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||||| |||||||| |||||| || || |||| || |||| ||||| Sbjct 45659710 TACAAGGTGCTGAAGCAGGTACACCCCGACAC-----GGGCATC-TCGTCCAAGGCCATG 45659763 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 ||||||||||| || ||||||||||| |||| ||||||| | |||||| ||| Sbjct 45659764 GGCATCATGAACTCCTTCGTCAACGACATCTTCGAGCGCATCGCCGGCGAGGCGTCACGC 45659823 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||||| || |||||||||| ||| ||| |||| ||||||||||| |||||||| Sbjct 45659824 CTGGCGCACTACAACAAGCGCTCCACCATCACGTCGCGGGAGATCCAGACGGCCGTGCGG 45659883 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||| | ||| |||||| ||||||| ||||||||| ||||||||||||| Sbjct 45659884 CTGCTGCTGCCCGGCGAGCTGGCCAAGCACGCCGTGTCCGAGGGCACCA 45659932 Score = 165 bits (182), Expect = 1e-34 Identities = 144/179 (80%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 724964 CAAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGA 725023 |||| ||||| ||||||||||| || ||||||||||| |||| ||||||| | ||| Sbjct 45754816 CAAGGCCATGGGCATCATGAACTCCTTCGTCAACGACATCTTCGAGCGCATCGCCGGCGA 45754875 Query 725024 GGCCGGTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGAC 725083 ||| |||||||||| || |||||||||| ||| ||| |||| ||||||||||| Sbjct 45754876 GGCGTCGCGCCTGGCGCACTACAACAAGCGCTCCACCATCACGTCGCGGGAGATCCAGAC 45754935 Query 725084 CGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 |||||||| ||| | ||| |||||| ||||||| ||||||||| ||||||||||||| Sbjct 45754936 GGCCGTGCGGCTGCTGCTGCCCGGCGAGCTGGCCAAGCACGCCGTGTCCGAGGGCACCA 45754994 Score = 143 bits (158), Expect = 4e-28 Identities = 180/244 (74%), Gaps = 6/244 (2%) Strand=Plus/Minus Query 724899 TACTCGTCCTTTATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCC 724958 ||||| || | ||||||||||||| |||||||| || || || ||| |||| Sbjct 14491530 TACTCCATCTATGTCTACAAGGTGCTGAAGCAGGTCCATCCTGACAC---TGG--CATC- 14491477 Query 724959 TCCAACAAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGC 725018 ||| |||| ||||| ||||||||||| || ||||| ||||| | || ||||| | Sbjct 14491476 TCCTCCAAGGCCATGGGCATCATGAACTCCTTCGTCAATGACATCTTTGAGCGCATTGCT 14491417 Query 725019 ACCGAGGCCGGTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATC 725078 || ||| |||||||| | || |||||||||| ||| ||| | || |||||| Sbjct 14491416 GGAGAAGCCTCCCGCCTGGCCCACTACAACAAGCGCTCCACCATCACATCCCGGGAGATC 14491357 Query 725079 CAGACCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGC 725138 ||||| |||||||||||| | | | || || ||||||| |||||||||||| |||||| Sbjct 14491356 CAGACAGCCGTGCGCCTGCTGCTCCCAGGAGAGCTGGCCAAGCACGCCGTCTCAGAGGGC 14491297 Query 725139 ACCA 725142 |||| Sbjct 14491296 ACCA 14491293 Score = 116 bits (128), Expect = 5e-20 Identities = 93/112 (83%), Gaps = 0/112 (0%) Strand=Plus/Minus Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090 |||||||||| || |||||||||| ||| ||| |||| ||||||||||| |||||| Sbjct 45772311 CGCCTGGCGCACTACAACAAGCGCTCCACCATCACGTCGCGGGAGATCCAGACGGCCGTG 45772252 Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 || ||| | ||| |||||| ||||||| ||||||||| ||||||||||||| Sbjct 45772251 CGGCTGCTGCTGCCCGGCGAGCTGGCCAAGCACGCCGTGTCCGAGGGCACCA 45772200 >seq1 Length=114059860 Score = 125 bits (138), Expect = 1e-22 Identities = 112/138 (81%), Gaps = 2/138 (1%) Strand=Plus/Minus Query 262091 CAGATCTGGTCGGCCATTGTCGCGGCCCATATCGAGACCGGCACGCCCTACATGGTCTAC 262150 ||| |||||| ||||| ||| | |||| | |||||| ||||| ||||||||| ||||| Sbjct 24151 CAGCTCTGGTACGCCATCATCGAGTCCCAGACCGAGACTGGCACCCCCTACATGCTCTAC 24092 Query 262151 AAGGACGCCGTCAACCTGACCAGCAACCAGCAGAACCTGGGCACCACGACAGAG-GCCAA 262209 |||||| || |||| || ||||||||||||||||||||||||| | || | ||| Sbjct 24091 AAGGACTCCTGCAACAGGAAGAGCAACCAGCAGAACCTGGGCACCATCA-AGTGCAGCAA 24033 Query 262210 CCTGTGCACCGAGATCGT 262227 |||||||||||||||||| Sbjct 24032 CCTGTGCACCGAGATCGT 24015 >seq2 Length=150265477 Score = 109 bits (120), Expect = 8e-18 Identities = 155/215 (72%), Gaps = 6/215 (3%) Strand=Plus/Minus Query 724928 GCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATGTCGATCATGAACTC 724987 |||||||||||| ||| ||||||| ||| |||| ||||| ||||||||||| Sbjct 1227719 GCAGGTGCACCCTG--ACCT---GGCCATC-TCCTCCAAGGCCATGAGCATCATGAACTC 1227666 Query 724988 GTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGCCTGGCGCGCTCCAA 725047 |||||||| |||||| | || | | | | | |||||| |||||||| | | || Sbjct 1227665 CTTTGTCAATGACATGTTTGAGCACCTGGCCTTGGAGGCCTCACGCCTGGCCCAGTACAG 1227606 Query 725048 CAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGCCTGATCATGCGCGG 725107 | | || ||| ||| ||| || ||| | ||||| || || | || | ||| ||| Sbjct 1227605 CCACCGTGCCACCATCAGCAGCCGGGAGGTGCAGACGGCAGTCAGGCTCCTGCTGCCCGG 1227546 Query 725108 CGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 || ||||||| ||||||||||||||||||||||| Sbjct 1227545 AGAGCTGGCCAAGCACGCCGTCTCCGAGGGCACCA 1227511 >seq3 Length=111636321 Score = 104 bits (114), Expect = 3e-16 Identities = 92/114 (81%), Gaps = 1/114 (1%) Strand=Plus/Plus Query 1455716 GAGCCGCTGCTGCGCGATAACCCGAACCGCTTTGTCCTGTTCCCCATCCGCTACCAGCGG 1455775 |||||||||||||| || ||||| |||||| ||| | |||||||||| ||||| Sbjct 98372018 GAGCCGCTGCTGCGGGAGAACCCCCGCCGCTTCGTCATCTTCCCCATCCAGTACCACGAC 98372077 Query 1455776 ATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGT 1455829 || ||| | ||||| ||| ||||||||||||||||| ||||| || |||||||| Sbjct 98372078 ATCTGGCAGATGTA-CAAGAAGGCCGAGGCCTCCTTCTGGACGGCGGAGGAGGT 98372130 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177649643171350