Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Parus_20major_20[refseq_20GCF_5F001522545.2_202016-06-30]
1,675 sequences; 1,020,310,768 total letters
Query= NC_026440.1
Length=2243109
Score E
Sequences producing significant alignments: (Bits) Value
seq6 188 1e-41
seq1 125 1e-22
seq2 109 8e-18
seq3 104 3e-16
>seq6
Length=71365269
Score = 188 bits (208), Expect = 1e-41
Identities = 180/229 (79%), Gaps = 6/229 (3%)
Strand=Plus/Minus
Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973
||||||||||| ||||||||||||||| || || |||| || |||| |||||
Sbjct 45654830 TACAAGGTGCTGAAGCAGGTGCACCCCGACAC-----GGGCATC-TCGTCCAAGGCCATG 45654777
Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033
||||||||||| || ||||||||||| |||| ||||||| | |||||| |||
Sbjct 45654776 GGCATCATGAACTCCTTCGTCAACGACATCTTCGAGCGCATCGCCGGCGAGGCGTCGCGC 45654717
Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093
||||||| || |||||||||| ||| ||| |||| ||||||||||| ||||||||
Sbjct 45654716 CTGGCGCACTACAACAAGCGCTCCACCATCACGTCGCGGGAGATCCAGACGGCCGTGCGG 45654657
Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142
||| | ||| |||||| ||||||| ||||||||| |||||||||||||
Sbjct 45654656 CTGCTGCTGCCCGGCGAGCTGGCCAAGCACGCCGTGTCCGAGGGCACCA 45654608
Score = 188 bits (208), Expect = 1e-41
Identities = 180/229 (79%), Gaps = 6/229 (3%)
Strand=Plus/Plus
Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973
||||||||||| ||||||||||||||| || || |||| || |||| |||||
Sbjct 45701695 TACAAGGTGCTGAAGCAGGTGCACCCCGACAC-----GGGCATC-TCGTCCAAGGCCATG 45701748
Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033
||||||||||| || ||||||||||| |||| ||||||| | |||||| |||
Sbjct 45701749 GGCATCATGAACTCCTTCGTCAACGACATCTTCGAGCGCATCGCCGGCGAGGCGTCGCGC 45701808
Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093
||||||| || |||||||||| ||| ||| |||| ||||||||||| ||||||||
Sbjct 45701809 CTGGCGCACTACAACAAGCGCTCCACCATCACGTCGCGGGAGATCCAGACGGCCGTGCGG 45701868
Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142
||| | ||| |||||| ||||||| ||||||||| |||||||||||||
Sbjct 45701869 CTGCTGCTGCCCGGCGAGCTGGCCAAGCACGCCGTGTCCGAGGGCACCA 45701917
Score = 185 bits (204), Expect = 1e-40
Identities = 179/229 (78%), Gaps = 6/229 (3%)
Strand=Plus/Plus
Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973
||||||||||| |||||||| |||||| || || |||| || |||| |||||
Sbjct 45659710 TACAAGGTGCTGAAGCAGGTACACCCCGACAC-----GGGCATC-TCGTCCAAGGCCATG 45659763
Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033
||||||||||| || ||||||||||| |||| ||||||| | |||||| |||
Sbjct 45659764 GGCATCATGAACTCCTTCGTCAACGACATCTTCGAGCGCATCGCCGGCGAGGCGTCACGC 45659823
Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093
||||||| || |||||||||| ||| ||| |||| ||||||||||| ||||||||
Sbjct 45659824 CTGGCGCACTACAACAAGCGCTCCACCATCACGTCGCGGGAGATCCAGACGGCCGTGCGG 45659883
Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142
||| | ||| |||||| ||||||| ||||||||| |||||||||||||
Sbjct 45659884 CTGCTGCTGCCCGGCGAGCTGGCCAAGCACGCCGTGTCCGAGGGCACCA 45659932
Score = 165 bits (182), Expect = 1e-34
Identities = 144/179 (80%), Gaps = 0/179 (0%)
Strand=Plus/Plus
Query 724964 CAAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGA 725023
|||| ||||| ||||||||||| || ||||||||||| |||| ||||||| | |||
Sbjct 45754816 CAAGGCCATGGGCATCATGAACTCCTTCGTCAACGACATCTTCGAGCGCATCGCCGGCGA 45754875
Query 725024 GGCCGGTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGAC 725083
||| |||||||||| || |||||||||| ||| ||| |||| |||||||||||
Sbjct 45754876 GGCGTCGCGCCTGGCGCACTACAACAAGCGCTCCACCATCACGTCGCGGGAGATCCAGAC 45754935
Query 725084 CGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142
|||||||| ||| | ||| |||||| ||||||| ||||||||| |||||||||||||
Sbjct 45754936 GGCCGTGCGGCTGCTGCTGCCCGGCGAGCTGGCCAAGCACGCCGTGTCCGAGGGCACCA 45754994
Score = 143 bits (158), Expect = 4e-28
Identities = 180/244 (74%), Gaps = 6/244 (2%)
Strand=Plus/Minus
Query 724899 TACTCGTCCTTTATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCC 724958
||||| || | ||||||||||||| |||||||| || || || ||| ||||
Sbjct 14491530 TACTCCATCTATGTCTACAAGGTGCTGAAGCAGGTCCATCCTGACAC---TGG--CATC- 14491477
Query 724959 TCCAACAAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGC 725018
||| |||| ||||| ||||||||||| || ||||| ||||| | || ||||| |
Sbjct 14491476 TCCTCCAAGGCCATGGGCATCATGAACTCCTTCGTCAATGACATCTTTGAGCGCATTGCT 14491417
Query 725019 ACCGAGGCCGGTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATC 725078
|| ||| |||||||| | || |||||||||| ||| ||| | || ||||||
Sbjct 14491416 GGAGAAGCCTCCCGCCTGGCCCACTACAACAAGCGCTCCACCATCACATCCCGGGAGATC 14491357
Query 725079 CAGACCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGC 725138
||||| |||||||||||| | | | || || ||||||| |||||||||||| ||||||
Sbjct 14491356 CAGACAGCCGTGCGCCTGCTGCTCCCAGGAGAGCTGGCCAAGCACGCCGTCTCAGAGGGC 14491297
Query 725139 ACCA 725142
||||
Sbjct 14491296 ACCA 14491293
Score = 116 bits (128), Expect = 5e-20
Identities = 93/112 (83%), Gaps = 0/112 (0%)
Strand=Plus/Minus
Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090
|||||||||| || |||||||||| ||| ||| |||| ||||||||||| ||||||
Sbjct 45772311 CGCCTGGCGCACTACAACAAGCGCTCCACCATCACGTCGCGGGAGATCCAGACGGCCGTG 45772252
Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142
|| ||| | ||| |||||| ||||||| ||||||||| |||||||||||||
Sbjct 45772251 CGGCTGCTGCTGCCCGGCGAGCTGGCCAAGCACGCCGTGTCCGAGGGCACCA 45772200
>seq1
Length=114059860
Score = 125 bits (138), Expect = 1e-22
Identities = 112/138 (81%), Gaps = 2/138 (1%)
Strand=Plus/Minus
Query 262091 CAGATCTGGTCGGCCATTGTCGCGGCCCATATCGAGACCGGCACGCCCTACATGGTCTAC 262150
||| |||||| ||||| ||| | |||| | |||||| ||||| ||||||||| |||||
Sbjct 24151 CAGCTCTGGTACGCCATCATCGAGTCCCAGACCGAGACTGGCACCCCCTACATGCTCTAC 24092
Query 262151 AAGGACGCCGTCAACCTGACCAGCAACCAGCAGAACCTGGGCACCACGACAGAG-GCCAA 262209
|||||| || |||| || ||||||||||||||||||||||||| | || | |||
Sbjct 24091 AAGGACTCCTGCAACAGGAAGAGCAACCAGCAGAACCTGGGCACCATCA-AGTGCAGCAA 24033
Query 262210 CCTGTGCACCGAGATCGT 262227
||||||||||||||||||
Sbjct 24032 CCTGTGCACCGAGATCGT 24015
>seq2
Length=150265477
Score = 109 bits (120), Expect = 8e-18
Identities = 155/215 (72%), Gaps = 6/215 (3%)
Strand=Plus/Minus
Query 724928 GCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATGTCGATCATGAACTC 724987
|||||||||||| ||| ||||||| ||| |||| ||||| |||||||||||
Sbjct 1227719 GCAGGTGCACCCTG--ACCT---GGCCATC-TCCTCCAAGGCCATGAGCATCATGAACTC 1227666
Query 724988 GTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGCCTGGCGCGCTCCAA 725047
|||||||| |||||| | || | | | | | |||||| |||||||| | | ||
Sbjct 1227665 CTTTGTCAATGACATGTTTGAGCACCTGGCCTTGGAGGCCTCACGCCTGGCCCAGTACAG 1227606
Query 725048 CAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGCCTGATCATGCGCGG 725107
| | || ||| ||| ||| || ||| | ||||| || || | || | ||| |||
Sbjct 1227605 CCACCGTGCCACCATCAGCAGCCGGGAGGTGCAGACGGCAGTCAGGCTCCTGCTGCCCGG 1227546
Query 725108 CGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142
|| ||||||| |||||||||||||||||||||||
Sbjct 1227545 AGAGCTGGCCAAGCACGCCGTCTCCGAGGGCACCA 1227511
>seq3
Length=111636321
Score = 104 bits (114), Expect = 3e-16
Identities = 92/114 (81%), Gaps = 1/114 (1%)
Strand=Plus/Plus
Query 1455716 GAGCCGCTGCTGCGCGATAACCCGAACCGCTTTGTCCTGTTCCCCATCCGCTACCAGCGG 1455775
|||||||||||||| || ||||| |||||| ||| | |||||||||| |||||
Sbjct 98372018 GAGCCGCTGCTGCGGGAGAACCCCCGCCGCTTCGTCATCTTCCCCATCCAGTACCACGAC 98372077
Query 1455776 ATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGT 1455829
|| ||| | ||||| ||| ||||||||||||||||| ||||| || ||||||||
Sbjct 98372078 ATCTGGCAGATGTA-CAAGAAGGCCGAGGCCTCCTTCTGGACGGCGGAGGAGGT 98372130
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 7177649643171350
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |