Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parus_20major_20[refseq_20GCF_5F001522545.2_202016-06-30] 1,675 sequences; 1,020,310,768 total letters Query= NC_027016.1 Length=226084 Score E Sequences producing significant alignments: (Bits) Value seq10 93.3 6e-14 >seq10 Length=31324166 Score = 93.3 bits (102), Expect = 6e-14 Identities = 194/289 (67%), Gaps = 0/289 (0%) Strand=Plus/Plus Query 214605 AAGGAGATAGCTGTCGAGCTGGAGGCCTTCTACGGTGATATCGAAGCCGTCGAACTCTAC 214664 || ||||| || | |||||||||| ||||||| || || || ||| | || || ||| Sbjct 5769212 AAAGAGATGGCAGCGGAGCTGGAGGAGCTCTACGGGGACATTGATGCCATGGAGCTGTAC 5769271 Query 214665 GCTGATTTCCTCGCTGAAAAACCGTGTCCCGATGCCATCCTCGGTGACGGCGTCCTCGAG 214724 | | | || | || || || | |||| |||||| | || || | | | || Sbjct 5769272 CCAGGCCTGCTGGTGGAGAAGCCCCGGCCCGGGGCCATCTTTGGCGAGACCATGGTGGAA 5769331 Query 214725 TCGGGGGCTCCGTTCTCCCTGAGGGGACTCGCGGCGAACGTCATCTGCTCCCCGGGCTAC 214784 |||||| || |||||||||| ||| || || || | |||||||||||| | ||| Sbjct 5769332 ATGGGGGCACCATTCTCCCTGAAGGGGCTGATGGGCAATGCCATCTGCTCCCCTGAGTAC 5769391 Query 214785 TGGAAACGCAACACACTCGGTAGCTCCGCGAGTTTCAACATCGTGAGGAGCGCGACCCTT 214844 ||||| | || ||| |||| || | | | || ||||||| | | || |||| Sbjct 5769392 TGGAAGCCCAGCACCTTCGGGGGCAAGGTGGGCTTTGACATCGTCAACACAGCCTCCCTG 5769451 Query 214845 CAGTCTCTCATCTGTAGCAACGTCAAGGGATGTCCGTTAGCCGCATTCC 214893 ||| |||||||| | |||||| || || ||||| || | || |||| Sbjct 5769452 CAGAAGCTCATCTGCAACAACGTGAAAGGCTGTCCCTTCACTGCCTTCC 5769500 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 723325655052000