Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parus_20major_20[refseq_20GCF_5F001522545.2_202016-06-30] 1,675 sequences; 1,020,310,768 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq17 143 8e-29 seq18 104 7e-17 seq25 102 2e-16 seq20 87.8 5e-12 seq2 84.2 7e-11 >seq17 Length=13820886 Score = 143 bits (158), Expect = 8e-29 Identities = 169/229 (74%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 140509 TACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAG 140568 ||||||| || | | || ||||| || ||||| ||||| || || || || || |||| Sbjct 1694167 TACCACCCCGCAGGCGCAGGACAAGGTGCAGAGTTGACTCCTTCTGGATGTTGTAGTCAG 1694108 Query 140569 ATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAG 140628 | | || || |||||||| || || || ||||||||||| || | ||||| ||||||| Sbjct 1694107 ACAGGGTACGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGAG 1694048 Query 140629 GAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAA 140688 | || ||||| |||||||| || || || || || || ||||| | ||| || || | Sbjct 1694047 GGATGCCTTCCTTATCCTGGATCTTGGCCTTGACGTTCTCAATGGTGTCACTGGGCTCCA 1693988 Query 140689 CTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 |||| || || | ||||| || || || || || ||||| |||||||| Sbjct 1693987 CTTCCAGAGTGATAGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 1693939 Score = 125 bits (138), Expect = 2e-23 Identities = 167/232 (72%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 ||| ||||| || | | || || || || ||||| || ||||| || || || || || Sbjct 1693713 CATTCCACCCCGCAGGCGCAGCACCAGGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTC 1693654 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 ||| | || || |||||||| || || || ||||| || || || | ||||||||||| Sbjct 1693653 AGACAGGGTACGGCCATCTTCCAGCTGCTTCCCAGCGAAAATCAGCCTCTGCTGATCAGG 1693594 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 ||| || ||||| || || || || || || || ||||| ||||| | ||| || || Sbjct 1693593 AGGGATGCCTTCCTTGTCTTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTC 1693534 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCATT 140738 || ||||| || | ||||| || || || || || || || ||||||||| Sbjct 1693533 CACCTCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCATT 1693482 >seq18 Length=10486032 Score = 104 bits (114), Expect = 7e-17 Identities = 127/173 (73%), Gaps = 3/173 (2%) Strand=Plus/Plus Query 349715 ACTGCTGCAGCAATTGCATATGGGCTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTT 349774 || ||||| || ||||| ||||| || || || ||| || ||| || ||||| ||| Sbjct 866658 ACAGCTGCTGCCATTGCTTATGGACTGGACAA---GAGAGAGGGAGAGAAGAATATCCTT 866714 Query 349775 ATTTTTGATTTAGGTGGTGGTACTTTTGATGTATCACTACTAACACTTGAAGAGGGAATT 349834 | ||||| | || ||||| ||||||||||| || || || ||| |||| | ||| | Sbjct 866715 GTATTTGACCTGGGCGGTGGGACTTTTGATGTGTCCCTCCTTACAATTGACAACGGAGTC 866774 Query 349835 TTTGAAGTTAAAGCAACTGCTGGTGATACACATCTTGGTGGAGAAGATTTTGA 349887 ||||||||| || ||| |||||| || || || ||||| ||||| ||||| Sbjct 866775 TTTGAAGTTGTGGCTACTAATGGTGACACTCACCTGGGTGGTGAAGACTTTGA 866827 Score = 96.9 bits (106), Expect = 1e-14 Identities = 139/196 (71%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 183250 CAGCTTGAACAGCTGCACCATATGCAACAGCTTCATCTGGGTTAATTGAACGAGATAATT 183309 |||| || |||||||| ||||| || ||||| |||||||||||||| |||||| | Sbjct 867527 CAGCCTGGACAGCTGCCCCATAGGCCACAGCCTCATCTGGGTTAATGCCACGAGAAGGCT 867468 Query 183310 CTTTGCCATTAAAAAATTCTGAAAGCATTTGTTGAATTTTTGGAATTCTAGTTGAACCAC 183369 | || ||||| || || ||| || | || || ||||| || || | |||||| |||| Sbjct 867467 CCTTCCCATTGAAGAACTCTTTAACAAGCTGCTGGATTTTGGGGATGCGAGTTGATCCAC 867408 Query 183370 CGACTAATACTACTTCATCGATATTACTTTTACTAATTTGTGAATCTTTTAAAACTTTTT 183429 | || | || | ||||| |||| | || | | | ||||||| | |||||| | Sbjct 867407 CAACCAGGACAATCTCATCAATATCAGACTTCTTCAGGTCAGAATCTTCCAGAACTTTCT 867348 Query 183430 CAACAGGGTCCATAGT 183445 |||||| | |||||| Sbjct 867347 GAACAGGCTTCATAGT 867332 >seq25 Length=6808513 Score = 102 bits (112), Expect = 2e-16 Identities = 112/149 (75%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 349598 ACAGTAACTGATGCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCA 349657 || || ||| |||| || | ||||| ||||||||||| || || ||||||| ||| Sbjct 3075941 ACTGTTACTAATGCAGTAGTGACTGTCCCAGCCTATTTCAACGACTCCCAGCGCCAGGCA 3075882 Query 349658 ACAAAAGATGCTGGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACT 349717 || ||||||||||| | ||||| ||| | || || || ||||| || || || ||||| Sbjct 3075881 ACGAAAGATGCTGGAACTATTGCAGGGCTCAACGTGCTGAGAATCATCAACGAGCCCACA 3075822 Query 349718 GCTGCAGCAATTGCATATGGGCTTGATAA 349746 || || || ||||| |||||||| || || Sbjct 3075821 GCAGCTGCCATTGCCTATGGGCTGGACAA 3075793 >seq20 Length=9871655 Score = 87.8 bits (96), Expect = 5e-12 Identities = 89/116 (77%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 140526 AGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCT 140585 || || || |||||||| |||||||| || || || || ||||| | || ||||| ||| Sbjct 6391054 AGCACCAGGTGAAGAGTGGACTCTTTCTGGATGTTGTAGTCAGAGAGGGTGCGCCCGTCT 6390995 Query 140586 TCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTT 140641 || || || || ||||||||||| || | ||||| || || ||||| ||||| || Sbjct 6390994 TCCAGCTGCTTCCCAGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATGCCTTCCTT 6390939 >seq2 Length=150265477 Score = 84.2 bits (92), Expect = 7e-11 Identities = 95/125 (76%), Gaps = 2/125 (2%) Strand=Plus/Plus Query 223722 CCTCATCTCTTGATATTAA-TTCATTTGAAAATGTTAATCCAGGCATTAAACCTCTCTTT 223780 |||||||||| | || ||| |||||| || || || ||||||||||| || || ||||| Sbjct 130841010 CCTCATCTCT-GCTAATAAGTTCATTGGAGAAAGTCAATCCAGGCATCAAGCCCCTCTTC 130841068 Query 223781 TTCATCCAAAATATTGCGCAAAAAGCTCCTGaaaaaaaTATACCTTCTACACAAGCAAAC 223840 |||| ||||||||| || ||| | || ||||| || || ||||| || |||||| Sbjct 130841069 TTCAGCCAAAATATAGCAGCAAAGGAACCCGAAAAGAAGATGCCTTCCACTGCAGCAAAG 130841128 Query 223841 GCTAC 223845 || || Sbjct 130841129 GCAAC 130841133 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515221881220025