Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parus_20major_20[refseq_20GCF_5F001522545.2_202016-06-30] 1,675 sequences; 1,020,310,768 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq17 179 4e-40 seq20 125 8e-24 seq1 109 6e-19 seq29 84.2 2e-11 >seq17 Length=13820886 Score = 179 bits (198), Expect = 4e-40 Identities = 171/219 (78%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| |||||||||||||| || || |||||||| || || |||||||| ||| | | Sbjct 1693710 AATGCAGATCTTTGTCAAGACCCTGACGGGCAAGACCATCACCCTTGAGGTCGAGCCCAG 1693769 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||| | ||||| || | ||||| || || ||||| ||||| || || ||||| ||||| Sbjct 1693770 TGACACCATTGAGAACGTCAAGGCCAAGATCCAGGATAAGGAAGGCATCCCTCCTGACCA 1693829 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 |||| | || ||||||||||| ||||| || || |||| |||||||| | ||||| || Sbjct 1693830 GCAGAGGCTTATTTTTGCTGGCAAGCAGCTGGAAGATGGCCGTACCCTGTCTGACTACAA 1693889 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCT 27623 |||| |||||||| ||||| ||||| || |||| || Sbjct 1693890 CATCCAGAAGGAATCTACTCTGCATCTTGTGCTGCGCCT 1693928 Score = 170 bits (188), Expect = 2e-37 Identities = 175/229 (76%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| ||||| || ||||| || || |||||||| || || |||||||| ||| | | Sbjct 1693482 AATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTTGAGGTGGAGCCCAG 1693541 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||| | ||||| ||| | ||||| || || || |||||||| || || ||||| || || Sbjct 1693542 TGACACCATTGAGAATGTCAAGGCCAAGATCCAAGACAAGGAAGGCATCCCTCCTGATCA 1693601 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 |||| | || ||||| ||||| ||||| || || |||| |||||||| | ||||| || Sbjct 1693602 GCAGAGGCTGATTTTCGCTGGGAAGCAGCTGGAAGATGGCCGTACCCTGTCTGACTACAA 1693661 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGA 27633 |||| || ||||||||||| || || || |||| || || |||||| Sbjct 1693662 CATCCAGAAAGAATCCACTCTGCACCTGGTGCTGCGCCTGCGGGGTGGA 1693710 Score = 170 bits (188), Expect = 2e-37 Identities = 174/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| ||||| || || ||||||||||| ||||| || || ||| | || Sbjct 1693939 ATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACTATCACTCTGGAAGTGGAGCCCAGT 1693998 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| || | ||||| || || ||||| ||||| || || ||||| |||||| Sbjct 1693999 GACACCATTGAGAACGTCAAGGCCAAGATCCAGGATAAGGAAGGCATCCCTCCTGACCAG 1694058 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | || || |||||||| ||||| || || |||| |||||||| | ||||| || Sbjct 1694059 CAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGTACCCTGTCTGACTACAAC 1694118 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| || ||||| || || ||| |||| || || ||||| Sbjct 1694119 ATCCAGAAGGAGTCAACTCTGCACCTTGTCCTGCGCCTGCGGGGTGG 1694165 >seq20 Length=9871655 Score = 125 bits (138), Expect = 8e-24 Identities = 108/134 (81%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||||||||| || || |||||||| || || |||||||||||| | || Sbjct 6389748 ATGCAGATCTTTGTCAAGACCCTGACTGGCAAGACCATCACCCTTGAGGTTGAGCCCAGT 6389807 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | |||| ||| ||||||| || || ||||||||||| || ||||| ||||||||| Sbjct 6389808 GACACTATTGAAAACGTGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCAGACCAG 6389867 Query 27526 CAGCGTCTAATTTT 27539 ||| | || || || Sbjct 6389868 CAGAGGCTGATCTT 6389881 Score = 93.3 bits (102), Expect = 5e-14 Identities = 99/131 (76%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 27502 AAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGAT 27561 ||||| || ||||| |||||||||||| | || || |||||||| ||||| || || || Sbjct 6390939 AAGGAAGGCATTCCCCCAGACCAGCAGAGGCTGATCTTTGCTGGGAAGCAGCTGGAAGAC 6390998 Query 27562 GATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGT 27621 | || ||||| | ||||| || |||| || || ||||||||||| || || |||| Sbjct 6390999 GGGCGCACCCTCTCTGACTACAACATCCAGAAAGAGTCCACTCTTCACCTGGTGCTGCGC 6391058 Query 27622 CTTCGCGGTGG 27632 || | ||||| Sbjct 6391059 CTCAGGGGTGG 6391069 >seq1 Length=114059860 Score = 109 bits (120), Expect = 6e-19 Identities = 157/220 (71%), Gaps = 6/220 (3%) Strand=Plus/Plus Query 80573 CCGGAGACCCCGCGAACGTCTCGTACGGGCCCTCCGTCTTGGCCAGCTCACA---CGACT 80629 ||||||| ||| || | || || || ||||| | | | ||||||||||||| | || Sbjct 22266 CCGGAGAGCCCTCGTAGGTGTCATAGGGGCCGTGCTCCCTGGCCAGCTCACAGCTGGCCT 22325 Query 80630 CCATAAGGGCCGCGTGATAAATGCACTCAAAGACGCCCTTGTTCACACCGCGCGCCTGTG 80689 || |||||| ||| |||||| ||| |||| | || ||| | | | |||| | Sbjct 22326 CC---AGGGCCCCGTAGTAAATGGTCTCGAAGATGTGCTGGTTGAGGCGCTGAGCCTCGG 22382 Query 80690 GGTCGTCGAACGACAAGCCCATCATCATGAACACGTCAGCCAGGCCCTGAACGCCGATGG 80749 | ||||| | || | ||| | ||||| |||||||||||||||| ||||||||| Sbjct 22383 CGCTCTCGAAGGGGAACCTCATGAGGATGAAGGCGTCAGCCAGGCCCTGCACGCCGATGC 22442 Query 80750 CGATCGGGCGGTGGCGCTTGTTCGATCGCTCGGCCTCCGG 80789 |||| |||||||| || ||| || |||||||||| ||| Sbjct 22443 CGATGGGGCGGTGCCGGCGGTTGGAGCGCTCGGCCTGCGG 22482 >seq29 Length=4327975 Score = 84.2 bits (92), Expect = 2e-11 Identities = 94/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 32125 ACCATTGTCAACCTTGCTCAGAACTTTGTCGGTGCAAATAACCTGAACTTACTCGAGCCA 32184 ||||| | ||| | |||||||||||||| || |||||||| ||||| ||| |||| Sbjct 1177145 ACCATCATTAACTTGGCTCAGAACTTTGTGGGCAGCAATAACCTCAACTTGCTCCAGCCC 1177086 Query 32185 TCTGGACAGTTTGGGACCCGGCTCGCCGGTGGCAAGGATGCTGCGAGCTCCCGTTACATC 32244 ||| |||||||| || |||| ||| || || || |||| ||| | || |||||| Sbjct 1177085 ATTGGTCAGTTTGGCACAAGGCTGCACGGAGGGAAAGACTCTGCCAGCCCTCGATACATC 1177026 Query 32245 TTCACC 32250 |||||| Sbjct 1177025 TTCACC 1177020 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570298459126000