Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parus_20major_20[refseq_20GCF_5F001522545.2_202016-06-30] 1,675 sequences; 1,020,310,768 total letters Query= NC_028379.1 Length=205896 Score E Sequences producing significant alignments: (Bits) Value seq12 295 9e-75 >seq12 Length=20202851 Score = 295 bits (326), Expect = 9e-75 Identities = 677/1004 (67%), Gaps = 24/1004 (2%) Strand=Plus/Minus Query 13600 CGCCGGGAGACTACGTGAACATGACGGCCGACTGCGTGGCCTTCGTGAAAGACAGGGGGT 13659 ||||||| || ||| ||||||| ||| |||||| |||||| | | | || | | Sbjct 4814627 CGCCGGGCGAATACCTGAACATTACGAGGGACTGCAGAGCCTTCAAGGAGACCCGGCGCT 4814568 Query 13660 ATCTCGTGAGGCCCCTGAGCCTGGAAGAGGTCGAGTTTCCCATCGCCTACTCGATCGTGA 13719 | ||| | ||||| |||| ||| ||| || || |||||||||||||| || || | Sbjct 4814567 ACATCGAGTTTCCCCTCAGCCAGGAGGAGAAGGACTTCCCCATCGCCTACTCCATGGTCA 4814508 Query 13720 TCCACCACAAGATCGAGATGTTCGAGCGCCTCCTGAGGGCCATCTACGCCCCGCAGAACC 13779 ||||| |||| ||||| ||||| ||||| |||||| || || ||||| |||| ||||| Sbjct 4814507 TCCACAACAAAATCGACATGTTTGAGCGGCTCCTGCGGTCCGTCTACTCCCCCCAGAATG 4814448 Query 13780 TCTACTGCGTCCACGTGGACTCCAAGTCCGGCGACGAGTTCATCCGGGGCGTCTCGGCCA 13839 | ||||| ||||| |||||| ||| ||| | || ||| || ||| ||||| Sbjct 4814447 TGTACTGTGTCCATGTGGACAGCAAATCCCCGGCCGCCTTCCAGGAGGCCGTGCGGGCCA 4814388 Query 13840 TCGCCAGGTGCTTCCCTAACGTGGCCCTGGCCCACCGGCTGCACGACGTGGTGTACGGCT 13899 | || |||||||| ||||| | ||||| ||| ||| | |||||| || | | Sbjct 4814387 TTGCTGCCTGCTTCCCCAACGTCTTCGTGGCCAGCCGCCTGGAGAGCGTGGTCTATGCCG 4814328 Query 13900 CCTGGAGTCGCGTGCAGGCCGACCTCAGCTGCATGTCGGACCTGGACGCCTCCCCCGTCA 13959 ||||| || ||||||||||||||| ||||||| ||||||| |||||| Sbjct 4814327 CCTGGTCCCGGCTGCAGGCCGACCTCAACTGCATGCAGGACCTGCTGCAGAGCCCCGTGC 4814268 Query 13960 AGTGGAGGTACCTGCTCAACCTGTGCGGGATGGACTTCCCGCTCAAGACCAACCTGGAGA 14019 |||| | ||||| ||||| ||||| | |||||||| |||||||||| |||| Sbjct 4814267 CGTGGCGATACCTCATCAACACTTGCGGCACCGACTTCCCCATCAAGACCAATGGCGAGA 4814208 Query 14020 TCGTGCGGGCGCTGAAGGCCCTGGGCGGCAAGAACGCCCTGGAGAGCGAGGGCATGCC-- 14077 | || ||||||||| || ||| ||| | ||| | ||||| ||| | ||| Sbjct 4814207 TAGTCCGGGCGCTGCAGCTGCTGCAGGGCCATAACAACGTGGAGTCGGAG---AAGCCCT 4814151 Query 14078 CAACC-ACAAGCTGCACCGC-ATCAGGAAGAGGCACGTGGTGGCCAGCGGCGGCGTGGTG 14135 || || ||||| ||| ||| ||| | | |||| |||| | || | | | Sbjct 4814150 CAGCCGCCAAGCAGCAGCGCTGGCAGTACCA-CCACGAGGTG----GGGGAGACCATCT- 4814097 Query 14136 GTCAACACCGGCAGGAACAAGGCCCCGCCGCCGCTCAGGATCCCCATCTTTGCGGGAAAC 14195 || ||| | | ||| || |||||||| | ||| |||||| || |||| | | Sbjct 4814096 CTC-GCACTGCCCAGAAGAAACTGCCGCCGCCCCACAGCTACCCCATGTTCACGGGCAGC 4814038 Query 14196 GCTTACTTTGCGGTCACCCGGGAGTTCGTGGACTTCGTCCTCAAGGACGAGCCGGTGGCC 14255 || ||| |||||||| ||||| || ||| | | |||| || || || || ||| Sbjct 4814037 GCGTACAACGCGGTCACACGGGACTTTGTGCAGTACGTCTTCGAGAAC---CCCACGGCA 4813981 Query 14256 C---TGCTCATGCACTGGTTCGAGGACACGTACAGCCCCGACGAGCACCTGTGGGCCACC 14312 | | || | | |||| | |||||| |||||||| ||||||||| | ||||||||| Sbjct 4813980 CAAAAGTTCCTCGAGTGGTCCAAGGACAGCTACAGCCCTGACGAGCACGTCTGGGCCACC 4813921 Query 14313 GTGCAGAGAATGTACGGGACGCCCGGGGGGATCCCCGTTCA-CGTCAAGTACGACACCTC 14371 || | | ||| |||| |||||||| | || || || ||||| | | ||| Sbjct 4813920 CTGAACCGCATG-CCGGGCGTGCCGGGGGGCACTCCCCCCAGCGACAAGTTCCAGCTCTC 4813862 Query 14372 GGACATGTGGGCCAAGGTCAGGTTCGTCAAGTGGCACTACTACGAGGGGGATATCAAGAA 14431 ||||||| || | | | ||||||||| | ||| |||||||| |||| || Sbjct 4813861 GGACATGAACGCTCTTCCCCGCCTGGTCAAGTGGGAGTACCTGGAGGGGGACATCAGCAA 4813802 Query 14432 AGGGGCCCTGTACCCGCCTTGCGACGGCATCCACGTCCACGCCATCTGCATCTTCGGGTC 14491 || || |||||||| ||| |||| |||| | | |||||||||||| |||| Sbjct 4813801 GGGCGCGGCCTACCCGCCCTGCACCGGCCGCCACCAGCGCTCCATCTGCATCTACGGGGT 4813742 Query 14492 CGGCGACGTGAAGTGGCTGAAG-AGCGTCCCGCACCTGTTCGCCAACAAGTTCGACGACG 14550 ||||||||| ||| || | ||| | | || || || ||||||||||||||| || Sbjct 4813741 GGGCGACGTGCCCTGGATGCTGCAGCAGCAC-CATCTCTTGGCCAACAAGTTCGACCCCG 4813683 Query 14551 AGACGGACGAGTTCGCCGTGCGCTGTCTGGACGAGGACGTGCGC 14594 || |||||| ||| | | ||||| || ||| || ||||| Sbjct 4813682 AGGTGGACGATGCGGCCCTCCAGTGTCTCGAGGAGCACCTGCGC 4813639 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658725407648000