Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parus_20major_20[refseq_20GCF_5F001522545.2_202016-06-30] 1,675 sequences; 1,020,310,768 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq17 176 1e-38 seq20 107 4e-18 seq30 95.1 3e-14 >seq17 Length=13820886 Score = 176 bits (194), Expect = 1e-38 Identities = 166/212 (78%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||||||||| ||||| ||||| || |||||||| || || | ||||| | |||||| Sbjct 1694150 AGGACAAGGTGCAGAGTTGACTCCTTCTGGATGTTGTAGTCAGACAGGGTACGGCCATCT 1694091 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||||||||| || ||||| || | || ||||||||||| | |||||||| ||| Sbjct 1694090 TCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGGATGCCTTCCTTATCC 1694031 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || ||||| || ||||||||| | || || || |||||||| ||| Sbjct 1694030 TGGATCTTGGCCTTGACGTTCTCAATGGTGTCACTGGGCTCCACTTCCAGAGTGATAGTC 1693971 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || || ||||| ||||| | |||||| Sbjct 1693970 TTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 1693939 Score = 168 bits (186), Expect = 2e-36 Identities = 165/213 (77%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || ||||| || ||||| || || || |||||||| || || | ||||| | |||||| Sbjct 1693922 AGCACAAGATGCAGAGTAGATTCCTTCTGGATGTTGTAGTCAGACAGGGTACGGCCATCT 1693863 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||||||||| || || ||||| | || ||||||||||| | |||||||| ||| Sbjct 1693862 TCCAGCTGCTTGCCAGCAAAAATAAGCCTCTGCTGGTCAGGAGGGATGCCTTCCTTATCC 1693803 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || ||||| || ||||||||| | || ||||| || ||||| ||| Sbjct 1693802 TGGATCTTGGCCTTGACGTTCTCAATGGTGTCACTGGGCTCGACCTCAAGGGTGATGGTC 1693743 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115 || ||||| || ||||| ||||| | ||||||| Sbjct 1693742 TTGCCCGTCAGGGTCTTGACAAAGATCTGCATT 1693710 Score = 158 bits (174), Expect = 3e-33 Identities = 164/215 (76%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || ||||| |||||||| ||||| |||||||| || || | ||||| | |||||| Sbjct 1693694 AGCACCAGGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCAGACAGGGTACGGCCATCT 1693635 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 ||||||||||| || ||||| || || | || || |||||||| | ||||||||||| Sbjct 1693634 TCCAGCTGCTTCCCAGCGAAAATCAGCCTCTGCTGATCAGGAGGGATGCCTTCCTTGTCT 1693575 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || || || || ||||||||| | || ||||| || ||||| ||| Sbjct 1693574 TGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCCACCTCAAGGGTGATGGTC 1693515 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 || || || || ||||| || || | ||||||||| Sbjct 1693514 TTGCCAGTCAGGGTCTTCACGAAGATCTGCATTTT 1693480 >seq20 Length=9871655 Score = 107 bits (118), Expect = 4e-18 Identities = 106/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 210981 AAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACG 211040 ||||| || | || ||||| || |||| |||||||||||||||||||| |||||| Sbjct 6389881 AAGATCAGCCTCTGCTGGTCTGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTCACG 6389822 Query 211041 TTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTT 211100 ||||| || |||||| | |||||||| || ||||| ||||| || || || ||||| Sbjct 6389821 TTTTCAATAGTGTCACTGGGCTCAACCTCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTG 6389762 Query 211101 ACAAACACCTGCATTTT 211117 ||||| | |||||| || Sbjct 6389761 ACAAAGATCTGCATGTT 6389745 Score = 102 bits (112), Expect = 2e-16 Identities = 92/116 (79%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || |||||||||||||||||||| |||||||| || || | ||||| | || ||| Sbjct 6391054 AGCACCAGGTGAAGAGTGGACTCTTTCTGGATGTTGTAGTCAGAGAGGGTGCGCCCGTCT 6390995 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTT 211018 ||||||||||| || || ||||| || | || ||||| || |||| |||||||| Sbjct 6390994 TCCAGCTGCTTCCCAGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATGCCTTCCTT 6390939 >seq30 Length=5101010 Score = 95.1 bits (104), Expect = 3e-14 Identities = 85/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 211011 CCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCG 211070 |||||||||||||||||||| ||||||||| |||||||||||| | || |||||| Sbjct 3819490 CCTTCCTTGTCCTGGATCTTGGCTTTCACGTTCTCGATGGTGTCATTGGGCTCCACCTCG 3819549 Query 211071 AGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 || ||||| || || || || || ||||| || || | |||||| || Sbjct 3819550 AGGGTGATGGTTTTGCCGGTCAGGGTCTTCACGAAGATCTGCATCTT 3819596 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159127123511375