Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parus_20major_20[refseq_20GCF_5F001522545.2_202016-06-30] 1,675 sequences; 1,020,310,768 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq2 129 5e-25 seq32 87.8 1e-12 >seq2 Length=150265477 Score = 129 bits (142), Expect = 5e-25 Identities = 127/164 (77%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 29714 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGC 29773 ||||| ||||| || || |||||||||||||| || || |||||||| || ||||||||| Sbjct 103649474 AGCCCTGTGACATGGGCAATCATGTACGTGAGCAGTGAATAGCTGGCAATATTAAAGGGC 103649533 Query 29774 ACCCCGAGCCCCATGTCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGTCGCTC 29833 || || || |||||||| || |||||||| ||||| ||||| || | || || | Sbjct 103649534 ACTCCTAGTCCCATGTCTCCAGACCTCTGATAGAGTTGGCAAGACAATTCACCATTTAGA 103649593 Query 29834 ACGTAAAACTGACACATGGCATGGCACGGAGGAAGGGCCATGAG 29877 || || ||||| || | ||||||||| ||||| | ||||| || Sbjct 103649594 ACATAGAACTGGCAAAGGGCATGGCATGGAGGCAAAGCCATCAG 103649637 Score = 93.3 bits (102), Expect = 3e-14 Identities = 121/162 (75%), Gaps = 4/162 (2%) Strand=Plus/Plus Query 30017 AAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCT-GTGCTCGAA 30075 ||||||||||||||||| || ||||| ||||||| || ||||| || || ||||| ||| Sbjct 103652414 AAATGCCTCCACTGGAAACCATACACTGGTCCCAAATCACCCTCCTCTCTGGTGCT-GAA 103652472 Query 30076 GCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTC 30135 ||| ||| |||| || || | || || || || ||||| ||||| || || || | Sbjct 103652473 ACCCTGCTTATCCAGGAACTCACGCGACCCATTAGCATCCCAAATCTTCACACCTTTTGC 103652532 Query 30136 GGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAG 30177 || ||||| |||| ||||| || || || || || ||||| Sbjct 103652533 AGAAAGCTCCTTGGCATTTGTAGAACC-CT-ACAAAACACAG 103652572 >seq32 Length=74514349 Score = 87.8 bits (96), Expect = 1e-12 Identities = 84/108 (78%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 114284 TTAAGCTCCCTGCTGAGGACTACGTTTAGCCTGTCTCTCAGAGGTCTATTCTTTTCGGGG 114343 || |||||||||||||| || | || | |||||| | | ||| | ||||| || || Sbjct 73919681 TTGAGCTCCCTGCTGAGCACAATATTAATTCTGTCTTTTAAAGGACGGTTCTTCTCAGGA 73919622 Query 114344 ATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTACCT 114391 ||||||||||| || ||| ||||||||||||| | ||||| |||||| Sbjct 73919621 ATGGAGAACCACGTTTTTTTACCCATTATCACTGCATTCTGTTTACCT 73919574 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406154908559050