Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parus_20major_20[refseq_20GCF_5F001522545.2_202016-06-30] 1,675 sequences; 1,020,310,768 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq2 116 3e-21 seq3 89.7 4e-13 >seq2 Length=150265477 Score = 116 bits (128), Expect = 3e-21 Identities = 99/122 (81%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 4572 TCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTTTA 4631 || ||||||||||| ||||| || || || || ||||| ||||| || || ||||| || Sbjct 130841012 TCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAATCCAGGCATCAAGCCCCTCTTCTTC 130841071 Query 4632 AGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACGCT 4691 |||||||||||||| ||||| || || |||||||| |||||||| || || ||||| || Sbjct 130841072 AGCCAAAATATAGCAGCAAAGGAACCCGAAAAGAAGATGCCTTCCACTGCAGCAAAGGCA 130841131 Query 4692 AC 4693 || Sbjct 130841132 AC 130841133 Score = 100 bits (110), Expect = 2e-16 Identities = 101/130 (78%), Gaps = 1/130 (1%) Strand=Plus/Plus Query 4922 AAATCTTTCT-ACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAA 4980 || ||||||| || | |||||| ||||| || || ||||||||||||||||| |||| || Sbjct 130843861 AAGTCTTTCTCACCAGGTTTTCATTTACAATTCCATCACTGGCTGCAAAAAATGCCAGAA 130843920 Query 4981 CATGAGATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAATCTTTAG 5040 | ||||| |||||||| | ||| || | || || || |||||||| || | || || | Sbjct 130843921 CGTGAGAGATAAAGTATTTTTCATCTGCTTTCAGCTTGTTCCAGTGAGGAAGGTCCTTTG 130843980 Query 5041 TTAAATCAAC 5050 |||||||| Sbjct 130843981 ACAAATCAAC 130843990 Score = 84.2 bits (92), Expect = 2e-11 Identities = 72/89 (81%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 4248 ACACCAAATTTTTGGTATTCGGATACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAAC 4307 ||| |||| ||| ||||| || || ||||| || |||||||||||||| ||||| | Sbjct 130835128 ACAGCAAAACGTTGATATTCCGAAACCCGCTTCTCAAAGAAATTAGTTTTTCCTTCCAGA 130835187 Query 4308 GAAATATTTTCCATAAAATCAAACGGATT 4336 |||||||| ||||| |||||||| ||||| Sbjct 130835188 GAAATATTCTCCATGAAATCAAAAGGATT 130835216 >seq3 Length=111636321 Score = 89.7 bits (98), Expect = 4e-13 Identities = 79/99 (80%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 4817 AATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTCTATAGCAATCTG 4876 ||| || ||||| || || || || |||||||| |||||||||||||| || |||||||| Sbjct 98372949 AATGTAGGTGTCAATAAGAAGACTGTACATTTCTGAATGTATATTTTCCATGGCAATCTG 98372890 Query 4877 AAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTC 4915 || || || || || | ||||||||| | ||| ||||| Sbjct 98372889 GAAGCCATAGAAACAACGAGCTTCTGTGATTTGTACTTC 98372851 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427040882182775