Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parus_20major_20[refseq_20GCF_5F001522545.2_202016-06-30] 1,675 sequences; 1,020,310,768 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq17 138 3e-27 seq20 87.8 4e-12 >seq17 Length=13820886 Score = 138 bits (152), Expect = 3e-27 Identities = 165/223 (74%), Gaps = 6/223 (3%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || || || || ||||| || ||||| ||||||||||| || | | || | |||||| Sbjct 1693694 AGCACCAGGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCAGACAGGGTACGGCCATCT 1693635 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || ||||| ||||| || ||||||||||| || | | ||| |||||||| ||| Sbjct 1693634 TCCAGCTGCTTCCCAGCGAAAATCAGCCTCTGCTGATCAGGAGGGATGCCTTCCTTGTCT 1693575 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATA 152069 || || || |||||| |||| | | |||| ||| ||| || ||||| || || Sbjct 1693574 TGGATCTTGGCCTTGACATTCTCAATGGTGTC---ACTGGGCTCCACCTCAAGGGTGATG 1693518 Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTTACCCT 152112 || ||||| || || ||||||||||||| ||||||||| |||| Sbjct 1693517 GTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCATTTTTCCCT 1693475 Score = 132 bits (146), Expect = 1e-25 Identities = 159/215 (74%), Gaps = 6/215 (3%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 |||||||| || ||||| ||||| || ||||||||||| || | | || | |||||| Sbjct 1694150 AGGACAAGGTGCAGAGTTGACTCCTTCTGGATGTTGTAGTCAGACAGGGTACGGCCATCT 1694091 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || || || ||||| |||||||||||||| | | ||| |||||||| || Sbjct 1694090 TCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGGATGCCTTCCTTATCC 1694031 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATA 152069 || || || ||||| |||| | | |||| ||| ||| ||||| ||||| ||| Sbjct 1694030 TGGATCTTGGCCTTGACGTTCTCAATGGTGTC---ACTGGGCTCCACTTCCAGAGTGATA 1693974 Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || ||||| || || |||||||| |||| |||||| Sbjct 1693973 GTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 1693939 Score = 129 bits (142), Expect = 1e-24 Identities = 168/231 (73%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 151884 CTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTT 151943 ||||| | || |||||||| |||||||| || || ||||||||||| || | | || Sbjct 1693931 CTGAGGCGCAGCACAAGATGCAGAGTAGATTCCTTCTGGATGTTGTAGTCAGACAGGGTA 1693872 Query 151944 CTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCT 152003 | |||||||| || || || || || ||||||||||||||||| | | ||| ||| Sbjct 1693871 CGGCCATCTTCCAGCTGCTTGCCAGCAAAAATAAGCCTCTGCTGGTCAGGAGGGATGCCT 1693812 Query 152004 TCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCA 152060 ||||| || || || || ||||| |||| | | |||| ||| ||| || ||| Sbjct 1693811 TCCTTATCCTGGATCTTGGCCTTGACGTTCTCAATGGTGTC---ACTGGGCTCGACCTCA 1693755 Query 152061 AGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTTACCC 152111 || || || || |||||||| || ||||| || |||| ||||||| |||| Sbjct 1693754 AGGGTGATGGTCTTGCCCGTCAGGGTCTTGACAAAGATCTGCATTCCACCC 1693704 >seq20 Length=9871655 Score = 87.8 bits (96), Expect = 4e-12 Identities = 95/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 151883 CCTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGT 151942 |||||| | || || || |||||||| |||||||| ||||||||||| || | | || Sbjct 6391064 CCTGAGGCGCAGCACCAGGTGAAGAGTGGACTCTTTCTGGATGTTGTAGTCAGAGAGGGT 6391005 Query 151943 TCTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCC 152002 | ||| ||||| || ||||| || ||||| |||||||||||||| | | || || Sbjct 6391004 GCGCCCGTCTTCCAGCTGCTTCCCAGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATGCC 6390945 Query 152003 TTCCTT 152008 |||||| Sbjct 6390944 TTCCTT 6390939 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153796037923925