Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parus_20major_20[refseq_20GCF_5F001522545.2_202016-06-30] 1,675 sequences; 1,020,310,768 total letters Query= NC_033176.1 Length=224064 Score E Sequences producing significant alignments: (Bits) Value seq10 179 5e-40 seq18 104 3e-17 >seq10 Length=31324166 Score = 179 bits (198), Expect = 5e-40 Identities = 218/297 (73%), Gaps = 0/297 (0%) Strand=Plus/Minus Query 8289 GGAACGCGGCCAACGGACACCCCTTGACGTTGCTACAGACTAGAGACTGAATAGTTGCGC 8348 |||| || | || ||||| || || |||||| | |||| || ||| | | || Sbjct 5769500 GGAAGGCAGTGAAGGGACAGCCTTTCACGTTGTTGCAGATGAGCTTCTGCAGGGAGGCTG 5769441 Query 8349 TCTTGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGG 8408 | |||||||| | || ||||| | || |||||||||||||||||||||||| | |||| Sbjct 5769440 TGTTGACGATGTCAAAGCCCACCTTGCCCCCGAAGGTGCTGGGCTTCCAGTACTCAGGGG 5769381 Query 8409 AGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGC 8468 |||||||| | || |||| || || || |||||||| || ||||||| || | ||| Sbjct 5769380 AGCAGATGGCATTGCCCATCAGCCCCTTCAGGGAGAATGGTGCCCCCATTTCCACCATGG 5769321 Query 8469 TCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCA 8528 |||| || |||||||| ||| |||||||| ||||||| | || | ||||||||||| Sbjct 5769320 TCTCGCCAAAGATGGCCCCGGGCCGGGGCTTCTCCACCAGCAGGCCTGGGTACAGCTCCA 5769261 Query 8529 CAGCCTCGACGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTCCTG 8585 || || | ||| ||||| || || || || || || ||||| |||||||||| Sbjct 5769260 TGGCATCAATGTCCCCGTAGAGCTCCTCCAGCTCCGCTGCCATCTCTTTTTCTCCTG 5769204 Score = 113 bits (124), Expect = 6e-20 Identities = 170/242 (70%), Gaps = 0/242 (0%) Strand=Plus/Minus Query 9244 ATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGTTCTTGTTTCAGA 9303 ||||| || ||||||||||| || ||||| || ||| || || || | || || || Sbjct 5767574 ATGAGACGGGTGGTCTGGAAGAGCTGCTCATCGTCCCAGTCGGGGTGCTGGTGCTTGAGC 5767515 Query 9304 ACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATCATGAGCCCAGGT 9363 || || || || | |||||| || | |||||||| ||||| |||||||| ||||| || Sbjct 5767514 ACGTCACAGACGCGGTTGTGCTCGCGCAGCCAGATCGTGGCATACATCATCAGCCCTGGC 5767455 Query 9364 ACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGCACTTCGGGAGGA 9423 ||||| || || |||| || || |||| | ||| || || ||||| | ||| || Sbjct 5767454 ACCAGCCCGAACACCTCCTGCCCCACAGAGAACTGCAGGTGCTCAGGCACATGGGGTGGG 5767395 Query 9424 TAGATCATGTGCACCTGGACGTCTTTGACCGAGGGGGGATACATTTCACCGTCAATCATC 9483 || | ||| | |||| ||| |||| || || |||||||| || | |||||| Sbjct 5767394 TACAGCATCTCTGCCTGTGTGTCCCGCACCGTCGGCGGGTACATTTCTCCATTGATCATC 5767335 Query 9484 TG 9485 || Sbjct 5767334 TG 5767333 >seq18 Length=10486032 Score = 104 bits (114), Expect = 3e-17 Identities = 182/264 (69%), Gaps = 2/264 (1%) Strand=Plus/Plus Query 9224 TGATGGTT--TCCCCGATAATGATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCA 9281 || ||||| || ||||| | |||||| || | |||||||| || |||||||||||||| Sbjct 1685106 TGCTGGTTCCTCACCGATGAGGATGAGCCGCGCCGTCTGGAAGAGCTGCTCGTCACTCCA 1685165 Query 9282 TTCTGGATGTTCTTGTTTCAGAACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGT 9341 ||||| || | || || | || || || | |||||| || | ||||||| || Sbjct 1685166 GGTGGGATGGTCCCGCTTGAGCAGGTCACAGACGCGGTTGTGCTCGCGTAGCCAGAGCGT 1685225 Query 9342 GGCGTACATCATGAGCCCAGGTACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCAT 9401 |||||||| |||||| || | ||| || || |||| || || || ||||| || Sbjct 1685226 GGCGTACACGCAGAGCCCCGGCAGCAGCCCGAACACCTCCTGCCCCACTGCCAGCTGCTG 1685285 Query 9402 GTTTTCGGGCACTTCGGGAGGATAGATCATGTGCACCTGGACGTCTTTGACCGAGGGGGG 9461 | | ||||||| | | || || | |||||| ||| | | || ||||| ||| || Sbjct 1685286 CTCCTTGGGCACTCCCGACGGGTACACCATGTGAACCGGAGCCTCAGTGACCATGGGCGG 1685345 Query 9462 ATACATTTCACCGTCAATCATCTG 9485 |||| || || || | || ||| Sbjct 1685346 GTACACCTCTCCATCCACCACCTG 1685369 Score = 95.1 bits (104), Expect = 2e-14 Identities = 207/310 (67%), Gaps = 0/310 (0%) Strand=Plus/Plus Query 8277 CATCGGGAACTCGGAACGCGGCCAACGGACACCCCTTGACGTTGCTACAGACTAGAGACT 8336 |||| || || ||||||| | |||| ||| ||| || ||| || || || || Sbjct 1683138 CATCTGGCACGTGGAACGCCACGTACGGGCACTTCTTCACATTGAGGCACACGAGCTTCT 1683197 Query 8337 GAATAGTTGCGCTCTTGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCC 8396 | | ||| |||| || ||| | || || |||| || || |||||||| |||| Sbjct 1683198 TGAGGGATGCCGTCTTAACAATCTCAAAGCCGGTTGCTCCACCAAATGTGCTGGGTTTCC 1683257 Query 8397 AGTACCCCGGGGAGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCA 8456 |||| | |||||||||||| || | | || || || ||||| || ||||| || | Sbjct 1683258 AGTAGTCTGGGGAGCAGATGGGATTTCCAAAAAGCCCCTTTAGGGAAAATGGAGCTCCAA 1683317 Query 8457 ACTCGAGAATGCTCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGG 8516 ||| | ||||| || || || ||| ||||||| |||| || || | || || || Sbjct 1683318 TCTCCACCATGCTTTCCCCAAAAATGCCGTTGGGTTGGGGTTTCTCGAGCAGCAAGCCTA 1683377 Query 8517 TGTACAGCTCCACAGCCTCGACGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCT 8576 ||| | ||||| ||| || | |||||| || || | ||||| || || | || | Sbjct 1683378 GGTAAAACTCCAGAGCATCAATGTCTCCATACAGCTCTTCCAGTTCTGCTGCCTTTTCTT 1683437 Query 8577 TTTCTCCTGT 8586 |||||||| Sbjct 1683438 CCTCTCCTGT 1683447 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 716861790392000