Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parus_20major_20[refseq_20GCF_5F001522545.2_202016-06-30] 1,675 sequences; 1,020,310,768 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq17 104 2e-17 seq20 100 3e-16 >seq17 Length=13820886 Score = 104 bits (114), Expect = 2e-17 Identities = 163/231 (71%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || || || | || || ||||| || ||||||||| ||||| ||||| || Sbjct 1694165 CCACCCCGCAGGCGCAGGACAAGGTGCAGAGTTGACTCCTTCTGGATGTTGTAGTCAGAC 1694106 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 ||||| || | || || ||||||||||| || || ||||| | ||| ||||| | || Sbjct 1694105 AGGGTACGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGG 1694046 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACG-ACACA---GTGTCGCTCGACTC 41811 | || ||||| ||| ||| || ||| |||| | || ||||| || | ||| Sbjct 1694045 ATGCCTTCCTTATCCTGGATCTTGGCCTT----GACGTTCTCAATGGTGTCACTGGGCTC 1693990 Query 41812 CACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||| |||| || || || || || ||||| ||||| || || |||||||| Sbjct 1693989 CACTTCCAGAGTGATAGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 1693939 Score = 102 bits (112), Expect = 8e-17 Identities = 157/222 (71%), Gaps = 8/222 (4%) Strand=Plus/Minus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 || || | ||| |||||||| || |||||||| ||||| ||||| || ||||| || Sbjct 1693928 AGGCGCAGCACAAGATGCAGAGTAGATTCCTTCTGGATGTTGTAGTCAGACAGGGTACGG 1693869 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 | || || ||||||||||| || || || || | ||| ||||| | || | || ||| Sbjct 1693868 CCATCTTCCAGCTGCTTGCCAGCAAAAATAAGCCTCTGCTGGTCAGGAGGGATGCCTTCC 1693809 Query 41765 TTGTCCATGATTTTTTGCTTCAACGACG-ACACA---GTGTCGCTCGACTCCACCTCCAC 41820 || ||| ||| || ||| |||| | || ||||| || | ||| ||||| | Sbjct 1693808 TTATCCTGGATCTTGGCCTT----GACGTTCTCAATGGTGTCACTGGGCTCGACCTCAAG 1693753 Query 41821 CGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || || || || |||||||| ||||| || || |||||||| Sbjct 1693752 GGTGATGGTCTTGCCCGTCAGGGTCTTGACAAAGATCTGCAT 1693711 >seq20 Length=9871655 Score = 100 bits (110), Expect = 3e-16 Identities = 103/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 41632 ACCGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTC 41691 || ||| || | || || | |||||| || || ||| ||| ||||| ||||| ||||| Sbjct 6391073 ACAGCCACCCCTGAGGCGCAGCACCAGGTGAAGAGTGGACTCTTTCTGGATGTTGTAGTC 6391014 Query 41692 GGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGC 41751 |||||||||||| |||| || |||||||| || || || ||||| | ||| ||||| | Sbjct 6391013 AGAGAGGGTGCGCCCGTCTTCCAGCTGCTTCCCAGCAAAGATCAGCCTCTGCTGGTCTGG 6390954 Query 41752 GGGAACGCTCTCCTT 41766 ||||| || ||||| Sbjct 6390953 GGGAATGCCTTCCTT 6390939 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462294320510000