Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Passer_20domesticus_20[genbank_20GCA_5F001700915.1_202016-08-31] 2,301 sequences; 1,042,720,703 total letters Query= NC_001650.2 Length=184439 Score E Sequences producing significant alignments: (Bits) Value seq12 87.8 2e-12 >seq12 Length=147836772 Score = 87.8 bits (96), Expect = 2e-12 Identities = 116/161 (72%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 145750 AGGCCCGTGAGGTGGGCGACCATGTAGGTCAGCAGGGAGTAGCTGGCTATGTTGAAGGGC 145809 || || |||| ||||| | |||||| || ||||| || |||||||| || || || ||| Sbjct 46348736 AGCCCTGTGACATGGGCAATCATGTACGTGAGCAGTGAATAGCTGGCAATATTAAAAGGC 46348795 Query 145810 ACCCCCAGCCCCATGTCCCCCGAGCGCTGGTACAGCTGGCAGGAGAGCTCCCCGCCCGCC 145869 || || || |||||||| || || | ||| || || ||||| || | || || Sbjct 46348796 ACTCCTAGTCCCATGTCTCCAGACCTCTGATAGAGTTGGCATGACAATTCACCATTTAGA 46348855 Query 145870 ACGTAGAACTGGCACAGGAGGTGGCAGGGCGGCAGGGCCAT 145910 || ||||||||||| ||| ||||| || |||| ||||| Sbjct 46348856 ACATAGAACTGGCAAAGGGCATGGCATGGAGGCAAAGCCAT 46348896 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 590059827916040