Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Passer_20domesticus_20[genbank_20GCA_5F001700915.1_202016-08-31] 2,301 sequences; 1,042,720,703 total letters Query= NC_001731.1 Length=190289 Score E Sequences producing significant alignments: (Bits) Value seq4 150 2e-31 seq24 107 2e-18 >seq4 Length=19787094 Score = 150 bits (166), Expect = 2e-31 Identities = 175/236 (74%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 83119 GGGCGTGCCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCGTTGCGGCA 83178 |||| |||||| | || | | ||||||||||||||||||||| | ||| |||||||| Sbjct 5720062 GGGCACGCCGTCGGGGCCAATGAGGAACTTCTCGAAGTTCCAGGCGATGTCATTGCGGCA 5720003 Query 83179 CACTGGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAGCGTGCTCATGTCGTCGCTAGG 83238 || || |||||| ||| ||| |||| | ||| |||| | ||||||| || Sbjct 5720002 GACCGGGGACCAGATGATGTACTGCGGGTTGGTCATCAGCGAGGAGGGGTCGTCGTGCGG 5719943 Query 83239 CGCCGGCAGGGCCTCTCGTAGGAAGGCGAAGAGCGGATGTGCCCTTGCACCGTTGACCTC 83298 ||||| |||||| ||||||| |||||| || || || | ||||| ||||| Sbjct 5719942 GAAGGGCAGCGCCTCTTTCAGGAAGGTGAAGAGAGGGTGCGCGTTCTTCCCGTTCACCTC 5719883 Query 83299 GCACTTCTCGAAGAGCATAAAGTTCGGCTCGAAGCCGTTCCCAGGACGGACGTGCT 83354 |||||||||||| | ||| || ||||||| |||||| || |||||||| ||||||| Sbjct 5719882 GCACTTCTCGAACATCATGAAATTCGGCTTGAAGCCCTTGCCAGGACGAACGTGCT 5719827 >seq24 Length=61081188 Score = 107 bits (118), Expect = 2e-18 Identities = 123/163 (75%), Gaps = 3/163 (2%) Strand=Plus/Minus Query 83388 TTTCCTGGTGACCGAACTGGTTACACGGGAACCCAAGCACTACCAGCCCCCGAGCTCCTA 83447 || |||||| || ||||||||||| ||||| || ||||| ||||||| ||| | || Sbjct 9038790 TTACCTGGTATCCAAACTGGTTACAGGGGAAGCCCAGCACGACCAGCCGCCGGGGG--TA 9038733 Query 83448 GGCGCCGCTGCAGCTCGTTCATCTGAGTGTACTCCCGGACCGTGCTACCTCAGAGGGACG 83507 | | | || |||| ||| | ||| ||||| ||||| |||||| | |||||||| || | Sbjct 9038732 GCGGGCT-TGGAGCTGGTTGAGCTGGGTGTAATCCCGCACCGTGGTGCCTCAGAGCGAAG 9038674 Query 83508 CTACGTTCTCGATGAGCAAGACCCGGCCCCGTAAGAAGCCTAA 83550 | ||||||||||| || | || |||||||| || | ||| || Sbjct 9038673 CCACGTTCTCGATCAGGACCACGCGGCCCCGGAAAACGCCAAA 9038631 Score = 104 bits (114), Expect = 3e-17 Identities = 231/335 (69%), Gaps = 10/335 (3%) Strand=Plus/Minus Query 83065 CTCGATGTCGGGCTCCACGGCCAGGGTCTGG-CA-GCGGTGGCTGTACCTGCGCACGGGC 83122 || |||||||||||||| || || ||| || ||| ||||||| | || | || Sbjct 9039191 CTGGATGTCGGGCTCCA--GCTGGGCCGTGGGCATGCGTGGGCTGTAGCGCCGGAACGGT 9039134 Query 83123 GTGCCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCGTTGCGGCACACT 83182 || |||| ||||||| ||||||||| || ||||||| | |||| ||| | ||| Sbjct 9039133 TCCCCCTCAGGCCCCACCAGGAACTTCTCAAAATTCCAGGAGATGTCGGAGCGCCGCACG 9039074 Query 83183 GGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAGCGTGCTCATG-TCGTCGCTAGGCGC 83241 || |||| | | | |||| ||| || || ||| || | |||||| || || Sbjct 9039073 GGGCTCCAGACGACAAAGCGGGGCTCGGCCATCAG-GTGTGCAGGCTCGTCGGCCGGTGC 9039015 Query 83242 CGGCAGG-GCCTCTCGTAGGAAGGCGAAGAGCGGATGTGCCCTTGCACC-GTTGACCTCG 83299 |||||| | || | ||| ||||||| | ||||| | | || || ||| |||| | Sbjct 9039014 GGGCAGGTGAGCCTTG-AGGTAGGCGAACACGGGATGGGTG-TCGCTCCCGTTCACCTGG 9038957 Query 83300 CACTTCTCGAAGAGCATAAAGTTCGGCTCGAAGCCGTTCCCAGGACGGACGTGCTTCAGG 83359 ||||||| ||| || | ||||| ||||||||||| |||||| || |||||||||||| Sbjct 9038956 CACTTCTGGAACAGGGTGAAGTTGGGCTCGAAGCCACCCCCAGGCCGCACGTGCTTCAGG 9038897 Query 83360 GAAGGCAAGATCTCGGCATTCTGGGCGTTTTCCTG 83394 | | |||||| |||| | |||| ||||| Sbjct 9038896 GTGTTGAGGATCTCCTCATTGGTGCCGTTCTCCTG 9038862 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 608779289482040