Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Passer_20domesticus_20[genbank_20GCA_5F001700915.1_202016-08-31] 2,301 sequences; 1,042,720,703 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq7 167 2e-36 seq10 152 5e-32 seq22 125 7e-24 seq12 87.8 2e-12 >seq7 Length=14042894 Score = 167 bits (184), Expect = 2e-36 Identities = 176/232 (76%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 40685 GAAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAG 40744 |||||||||| || ||||| || || || || ||||| ||||||||| | || ||||| Sbjct 12378898 GAAAAATGCAGATCTTCGTCAAGACCCTGACAGGCAAGACCATCACCCTTGAGGTCGAGC 12378839 Query 40745 CCACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGG 40804 ||| ||||| | | | | |||||| || || | ||||| || ||||||||| | | Sbjct 12378838 CCAGCGACACCATTGAGAATGTCAAGGCCAAGATCCAGGACAAGGAAGGCATCCCCCCAG 12378779 Query 40805 ACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACT 40864 ||||||| | || |||| || ||||| |||||||| || | ||||||||| |||| Sbjct 12378778 ACCAGCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAGGATGGCCGCACCCTCTCTGACT 12378719 Query 40865 ACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 |||||||||||||||| | || |||||||| ||| ||||| |||| || || Sbjct 12378718 ACAACATCCAGAAGGAATCTACCCTGCATCTCGTGCTGCGCCTGAGAGGTGG 12378667 Score = 138 bits (152), Expect = 1e-27 Identities = 169/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || || || ||||| ||||||||| | || ||||| ||| Sbjct 12378665 ATGCAGATCTTCGTCAAGACCCTGACAGGCAAGACCATCACCCTTGAGGTCGAGCCCAGT 12378606 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| | |||| || || | |||||||| |||||||| | ||||| Sbjct 12378605 GACACCATTGAGAACG-TGAAGGCCAAGATCCAGGACAAAGAAGGCATCCCTCCTGACCA 12378547 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| | || |||| || ||||| |||||||| || | |||||||| |||||||| Sbjct 12378546 GCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAGGATGGCCGCACCCTGTCTGACTACAA 12378487 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||||||||| ||| | || ||||| || || ||||| || |||| || Sbjct 12378486 CATCCAGAAAGAGTCAACTCTGCACCTTGTCCTGCGCCTGCGGGGTGG 12378439 >seq10 Length=11116859 Score = 152 bits (168), Expect = 5e-32 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || || || ||||| ||||||||| | || ||||| ||| Sbjct 3464961 ATGCAGATCTTTGTCAAGACCCTGACTGGCAAGACCATCACCCTGGAAGTCGAGCCCAGT 3464902 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | |||||| || || | || || || ||||| ||| | |||||| Sbjct 3464901 GACACCATTGAGAATGTCAAGGCCAAGATCCAGGATAAGGAAGGCATTCCCCCAGACCAG 3464842 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || | || |||| ||| ||||| |||||||| |||| ||||||||| |||||||||| Sbjct 3464841 CAGAGGCTGATCTTCGCTGGCAAGCAGCTGGAGGACGGGCGCACCCTGTCCGACTACAAC 3464782 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||||||||||| |||| ||||| || ||| ||||| | ||||| || Sbjct 3464781 ATCCAGAAGGAATCCACCCTGCACCTGGTGCTGCGCCTCAGGGGTGG 3464735 Score = 149 bits (164), Expect = 6e-31 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || || || ||||| ||||||||| |||| || || ||| Sbjct 3465189 ATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTCGAGGTGGAGCCCAGT 3465130 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | |||||| || || | ||||| || || ||||| | |||||| Sbjct 3465129 GACACCATTGAGAATGTCAAGGCCAAGATCCAGGACAAGGAAGGTATCCCTCCTGACCAG 3465070 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || | || |||| || || || |||||||| |||| |||||||||| ||||||||| Sbjct 3465069 CAGAGGCTGATCTTTGCAGGGAAGCAGCTGGAGGACGGGCGCACCCTCTCTGACTACAAC 3465010 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||||||||||| |||| ||||| || ||| ||||| | ||||| || Sbjct 3465009 ATCCAGAAGGAATCCACCCTGCACCTGGTGCTGCGCCTCAGGGGTGG 3464963 Score = 140 bits (154), Expect = 3e-28 Identities = 170/229 (74%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || || || ||||| ||||||||| |||| || || ||| Sbjct 3464733 ATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTCGAGGTGGAGCCCAGT 3464674 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| | |||| || || | || || || ||||| || | ||||| Sbjct 3464673 GACACCATTGAGAACG-TGAAGGCCAAGATCCAGGATAAGGAAGGCATTCCTCCTGACCA 3464615 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| | || |||| || || || |||||||| |||| ||||||||| ||||||||| Sbjct 3464614 GCAGAGGCTGATCTTTGCAGGGAAGCAGCTGGAGGACGGGCGCACCCTGTCCGACTACAA 3464555 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 ||||||||| ||| | || ||||| || ||| ||||| |||| || ||| Sbjct 3464554 CATCCAGAAAGAGTCAACTCTGCACCTGGTGCTGCGCCTGAGAGGTGGC 3464506 Score = 134 bits (148), Expect = 1e-26 Identities = 157/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 40705 AAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCAAACG 40764 || || || || ||||| ||||||||| |||| || || ||| |||| | | | | Sbjct 3465402 AAGACCCTGACTGGCAAGACCATCACCCTCGAGGTGGAGCCCAGTGACACCATTGAGAAT 3465343 Query 40765 CTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTAC 40824 |||||| || || | || || || ||||| ||| | |||||||| | || |||| Sbjct 3465342 GTCAAGGCCAAGATCCAGGATAAGGAAGGCATTCCCCCAGACCAGCAGAGGCTGATCTTT 3465283 Query 40825 GCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCC 40884 || || || |||||||| |||| ||||||||| ||||||||||||||||||||| || Sbjct 3465282 GCAGGGAAGCAGCTGGAGGACGGGCGCACCCTGTCCGACTACAACATCCAGAAGGAATCC 3465223 Query 40885 ACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 || ||||| || ||| ||||| |||| || || Sbjct 3465222 ACCCTGCACCTGGTGCTGCGCCTGAGAGGTGG 3465191 Score = 127 bits (140), Expect = 2e-24 Identities = 169/232 (73%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 || ||||| || || || || || || || ||||| ||||||||| | || || || || Sbjct 3465753 AACATGCAGATCTTTGTCAAGACCCTGACTGGCAAGACCATCACCCTTGAGGTTGAGCCC 3465694 Query 40747 ACCGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805 | |||| | | | |||| | |||| || || | ||||| || ||||| || | || Sbjct 3465693 AGTGACACCATTGAGAACG-TGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCTCCTGA 3465635 Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865 |||||| | || |||| || || || |||||||| |||| ||||||||| || || Sbjct 3465634 CCAGCAGAGGCTGATCTTTGCAGGGAAGCAGCTGGAGGACGGGCGCACCCTGTCTGATTA 3465575 Query 40866 CAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 |||||||||||||| |||| ||||| || ||| ||||| |||| || ||| Sbjct 3465574 TAACATCCAGAAGGAATCCACCCTGCACCTGGTGCTGCGCCTGAGAGGTGGC 3465523 Score = 111 bits (122), Expect = 2e-19 Identities = 145/201 (72%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 40717 GGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCAAACGCTCAAGGAAAAA 40776 ||||| ||||||||| |||| || || ||| |||| | | | | |||||| || Sbjct 3464385 GGCAAGACCATCACCCTCGAGGTGGAGCCCAGTGACACCATTGAGAATGTCAAGGCCAAG 3464326 Query 40777 ATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAG 40836 || | || || || ||||| ||| | |||||||| | || |||| || || || ||| Sbjct 3464325 ATCCAGGATAAGGAAGGCATTCCCCCAGACCAGCAGAGGCTGATCTTTGCAGGGAAGCAG 3464266 Query 40837 CTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTA 40896 ||||| || | |||||||| || || |||||||||||||| |||| ||||| || Sbjct 3464265 CTGGAAGATGGCCGCACCCTGTCTGATTATAACATCCAGAAGGAATCCACCCTGCACCTG 3464206 Query 40897 GTGTTGCGCTTGAGGGGCGGC 40917 ||| ||||| | ||||| ||| Sbjct 3464205 GTGCTGCGCCTCAGGGGTGGC 3464185 >seq22 Length=110987800 Score = 125 bits (138), Expect = 7e-24 Identities = 96/114 (84%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 116576 GAGCCGCTGCTGCGCGAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGAC 116635 |||||||||||||| |||||||| ||||| ||||| || |||||||| || |||| ||| Sbjct 97726554 GAGCCGCTGCTGCGGGAGAACCCGCGCCGCTTCGTCATCTTCCCCATCCAGTACCACGAC 97726613 Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTG 116689 || |||| |||||||| ||||||||||| || |||||||| | ||||||||| Sbjct 97726614 ATCTGGCAGATGTACAAGAAGGCCGAGGCCTCCTTCTGGACGGCGGAGGAGGTG 97726667 >seq12 Length=147836772 Score = 87.8 bits (96), Expect = 2e-12 Identities = 95/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 117042 TGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTT 117101 |||| ||||| || || || || ||| ||||||||||||| ||||| || ||||||| Sbjct 20187177 TGGTTGCCTTTGCTGCAGTGGAAGGCATCTTCTTTTCGGGTTCCTTCGCTGCTATATTTT 20187118 Query 117102 GGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGG 117161 |||| ||||| | ||||| ||||| || |||||||| ||| || || || ||| | Sbjct 20187117 GGCTGAAGAAGAGGGGCCTGATGCCTGGATTGACTTTCTCCAATGAACTTATTAGCAGAG 20187058 Query 117162 ACGAGG 117167 | |||| Sbjct 20187057 ATGAGG 20187052 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515204381007760