Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Passer_20domesticus_20[genbank_20GCA_5F001700915.1_202016-08-31] 2,301 sequences; 1,042,720,703 total letters Query= NC_001987.1 Length=108409 Score E Sequences producing significant alignments: (Bits) Value seq12 95.1 8e-15 >seq12 Length=147836772 Score = 95.1 bits (104), Expect = 8e-15 Identities = 110/148 (74%), Gaps = 8/148 (5%) Strand=Plus/Plus Query 97402 TATTCTGCTCCAAAATGCCTCCATTGGAATCCATAAACAGGTCCAAGGTCTCCTTCTTCT 97461 ||||||||||||||||||||||| ||||| ||||| || ||||| | || || || ||| Sbjct 46352380 TATTCTGCTCCAAAATGCCTCCACTGGAAACCATACACTGGTCCCAAATCACCCTCCTCT 46352439 Query 97462 CTATCACAGAAACCAAGCTTATCTAAATAGGACCT----AGATCCATTTGCATCCCAAAT 97517 || | |||||| ||||||| |||| || || ||||| ||||||||||| Sbjct 46352440 CTGGTGCTGAAACCCTGCTTATC----CAGGAACTCACGCGACCCATTAGCATCCCAAAT 46352495 Query 97518 GTGCACACCAGATGCTGCAAGCTCTTTG 97545 | |||||| ||| | ||||||||| Sbjct 46352496 CTTCACACCTTTTGCAGAGAGCTCTTTG 46352523 Score = 86.0 bits (94), Expect = 4e-12 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 97117 GTGACATGGGCGATCATACAAGTTAATAGAGAATAGCTAGCAATGTTAAAAGGCACCCCT 97176 ||||||||||| ||||| | || | || |||||||| ||||| ||||||||||| ||| Sbjct 46348742 GTGACATGGGCAATCATGTACGTGAGCAGTGAATAGCTGGCAATATTAAAAGGCACTCCT 46348801 Query 97177 AGTCCCATATCAGCTGATCTTTGATATAACTGACAGGAAAGCTTTCCATCACACACATAA 97236 |||||||| || | || || ||||| | || || || | | |||| ||||| Sbjct 46348802 AGTCCCATGTCTCCAGACCTCTGATAGAGTTGGCATGACAATTCACCATTTAGAACATAG 46348861 Query 97237 AACTGACTCAATACATGACAGGGGGGCAACGCCAT 97271 ||||| | | |||| || || ||||| ||||| Sbjct 46348862 AACTGGCAAAGGGCATGGCATGGAGGCAAAGCCAT 46348896 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 346774274984570