Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Passer_20domesticus_20[genbank_20GCA_5F001700915.1_202016-08-31] 2,301 sequences; 1,042,720,703 total letters Query= NC_002188.1 Length=288539 Score E Sequences producing significant alignments: (Bits) Value seq22 111 3e-19 >seq22 Length=110987800 Score = 111 bits (122), Expect = 3e-19 Identities = 106/133 (80%), Gaps = 2/133 (2%) Strand=Plus/Minus Query 52057 GCATTTTTTGGAGCTCAGCTAAATTCTTTTATCCATGTTATTATGTACACTTATTATGGT 52116 || ||||| |||||||| | ||| | ||||| ||||| |||||||||| |||||||| Sbjct 73791014 GCTTTTTTCGGAGCTCAAATGAATGCGTTTATTCATGTCATTATGTACATGTATTATGGA 73790955 Query 52117 ATGGCCGCTTGTGGTCCTATGTT-CAGAAAGTATCTATGGTGGAAACGTTATCTTACTAT 52175 |||| |||||||| |||| || |||||| || || ||||||||||| ||| | || || Sbjct 73790954 TTGGCAGCTTGTGGCCCTAAATTTCAGAAA-TACCTGTGGTGGAAACGATATTTGACCAT 73790896 Query 52176 AATGCAGTTGGTA 52188 | |||| |||||| Sbjct 73790895 ATTGCAATTGGTA 73790883 Score = 104 bits (114), Expect = 4e-17 Identities = 110/145 (76%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 52185 GGTACAGTTCCATATAGCTATAGGACATACTGCTATGTCCATTTACATAGATTGCCCGTT 52244 ||| ||||||||| | |||| || || || || |||| ||||| || ||||| || || Sbjct 73790396 GGTGCAGTTCCATGTGACTATTGGCCACACAGCCTTGTCTATTTATATTGATTGTCCTTT 73790337 Query 52245 TCCAAAATGGATACAGTGGTCAGTTATTATCTATTCTATTAGTTTCATATTACTGTTTGG 52304 || |||||||| || ||| || ||| ||||| |||| | ||||| || |||||||| Sbjct 73790336 CCCTAAATGGATGCACTGGGGTGTCATTTTCTATGCTATCACCTTCATTTTCCTGTTTGG 73790277 Query 52305 TAACTTCTATTTTAGAACATACAAG 52329 ||||||||| | | | ||||| ||| Sbjct 73790276 TAACTTCTACTATCGGACATATAAG 73790252 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 923170246552040