Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Passer_20domesticus_20[genbank_20GCA_5F001700915.1_202016-08-31] 2,301 sequences; 1,042,720,703 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq12 102 8e-17 seq22 89.7 5e-13 >seq12 Length=147836772 Score = 102 bits (112), Expect = 8e-17 Identities = 107/141 (76%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 15888 AAAAATCAATATCTAGAGAAAACACATTATCTTTTTTATTTGACATAACTGACATTTTTT 15947 ||||||| ||| |||| || ||||| || || | | || |||||| | | || Sbjct 20179720 AAAAATCTGCATCCAGAGTGAAGACATTGTCCATTGTTTCTGCCATAACAGCAAAACGTT 20179779 Query 15948 GATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTTTCCA 16007 ||||||| ||| | ||| ||||||||||||||||||||||| | |||||||| |||| Sbjct 20179780 GATATTCTGAAACACGCTTCTCAAAGAAATTTGTTTTTCCTTCCAGAGAAATATTCTCCA 20179839 Query 16008 TAAAATCAAAAGGATTTTTTG 16028 | |||||||| ||||||| || Sbjct 20179840 TGAAATCAAACGGATTTTCTG 20179860 Score = 89.7 bits (98), Expect = 5e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 16259 TCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTA 16318 || || || || || | || || || || || | || ||||| || || | || || Sbjct 20187054 TCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAATCCAGGCATCAGGCCCCTCTTCTTC 20187113 Query 16319 ATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATACCTTCAACTGCGGCAAATGCA 16378 | |||||||||||| || || ||||| |||||||| || ||||| ||||| ||||| ||| Sbjct 20187114 AGCCAAAATATAGCAGCGAAGGAACCCGAAAAGAAGATGCCTTCCACTGCAGCAAAGGCA 20187173 Query 16379 ACCAATCGCTCACC 16392 |||| || |||||| Sbjct 20187174 ACCACTCTCTCACC 20187187 >seq22 Length=110987800 Score = 89.7 bits (98), Expect = 5e-13 Identities = 94/124 (76%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 16259 TCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTA 16318 || || ||||| || | || || ||||| || || || ||||||| ||||| ||| || Sbjct 97729176 TCATCTCTACTGATGAGTTCATTAGAAAAAGTGAGTCCAGGCATTAATCCTCTTTTCTTC 97729117 Query 16319 ATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATACCTTCAACTGCGGCAAATGCA 16378 | |||||| || | ||||| || ||||||||||| || ||||| || || ||||| || Sbjct 97729116 AGCCAAAAAATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACAGCTGCAAAGGCT 97729057 Query 16379 ACCA 16382 |||| Sbjct 97729056 ACCA 97729053 Score = 84.2 bits (92), Expect = 2e-11 Identities = 78/99 (79%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 16504 AATATAAGTATCTATTAGTAAACTATACATTTCTGAATGAATATTCTCCATTGCTATCTG 16563 ||| || || || || || | ||| |||||||||||||| ||||| ||||| || ||||| Sbjct 97727498 AATGTAGGTGTCAATAAGAAGACTGTACATTTCTGAATGTATATTTTCCATGGCAATCTG 97727439 Query 16564 AAAACCATAAAAGCATCTAGCTTCGGATATTTGTACTTC 16602 || ||||| || || | |||||| | ||||||||||| Sbjct 97727438 GAAGCCATAGAAACAACGAGCTTCTGTGATTTGTACTTC 97727400 Score = 82.4 bits (90), Expect = 7e-11 Identities = 77/98 (79%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 15926 TTTGACATAACTGACATTTTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTT 15985 || ||||| ||| ||| | || ||||||| |||| ||| |||||||||||||| || Sbjct 97730387 TTCGACATGACTCCCATCCTCTGGTATTCACCTACTCGCTTCTCAAAGAAATTTGTCTTG 97730328 Query 15986 CCTTCTAATGAAATATTTTCCATAAAATCAAAAGGATT 16023 ||||| | || || |||||||| || ||||||||||| Sbjct 97730327 CCTTCCAGAGAGATGTTTTCCATGAAGTCAAAAGGATT 97730290 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462498696998600