Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Passer_20domesticus_20[genbank_20GCA_5F001700915.1_202016-08-31] 2,301 sequences; 1,042,720,703 total letters Query= NC_002665.1 Length=108873 Score E Sequences producing significant alignments: (Bits) Value seq2 374 6e-99 >seq2 Length=21077231 Score = 374 bits (414), Expect = 6e-99 Identities = 687/1000 (69%), Gaps = 10/1000 (1%) Strand=Plus/Plus Query 107628 TACCTCAACATAACCAGAGACTGT-GAGCGCTTCAAGGCCCAAAGGAAGTTCATACAGTT 107686 ||||| ||||| || || ||||| |||| |||||||| || | ||| |||| Sbjct 2173022 TACCTGAACATTACGAGGGACTGCAGAGC-CTTCAAGGAGAGCCGGCGCTACATCGAGTT 2173080 Query 107687 CCCACTGAGTAAAGAAGAGCTAGACTTCCCCATTGCCTACTCGATGGTGGTCCATGAGAA 107746 ||| ||||| | || ||| || |||||||| |||||||| ||| | |||| | || Sbjct 2173081 CCCGCTGAGCCAGGAGGAGGAGGAGTTCCCCATCGCCTACTCCATGATCATCCACCACAA 2173140 Query 107747 GATTGAAAACTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGTGT 107806 || || | ||||| ||||| ||||| |||| || ||||| ||||| | ||||| || Sbjct 2173141 AATCGACATGTTTGAGCGGCTCCTGCGGTCCGTCTACGCCCCCCAGAATCTCTACTGCGT 2173200 Query 107807 CCACGTGGATGTGAAGTCCCCAGAGACTTTCAAAGAGGCGGTCAAGGCCATTATTTCCTG 107866 ||| || || || |||| | | ||| | ||||| || | ||||||| |||| Sbjct 2173201 CCATGTAGACAGCAAAGCCCCGGCCGCCTTCCAGGAGGCCGTGAGGGCCATTGCCGCCTG 2173260 Query 107867 CTTCCCCAATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCCAG 107926 |||||||||||||||| ||||||| ||| ||||| || ||||||||||| | Sbjct 2173261 CTTCCCCAATGTCTTCGTGGCCAGCCGCCTGGAAAGCGTGGTCTACGCCTCCTGGTCGCG 2173320 Query 107927 AGTGCAAGCTGACCTGAACTGTATGGAAGACTTGCTCCAGAGCTCAGTGCCATGGAAGTA 107986 ||||| || ||||| ||||| ||| | ||| |||| |||||| | ||||| ||| || Sbjct 2173321 GGTGCAGGCCGACCTCAACTGCATGCAGGACCTGCTGCAGAGCCCCGTGCCGTGGCGCTA 2173380 Query 107987 CTTACTGAATACATGCGGGACAGACTTCCCCATAAAGACCAATGCCGAGATGGTCCTGGC 108046 | | | || || ||||| || ||||||||||| |||||||| ||||||||||| | ||| Sbjct 2173381 CCTCATCAACACCTGCGGCACCGACTTCCCCATCAAGACCAACGCCGAGATGGTGCGGGC 2173440 Query 108047 CCTCAAGATGTTGAAGGGTAAGAACAGTATGGAGTCTGAGGTACCTTCTGAGTCCaaaaa 108106 || || || || |||| |||||| |||||||| ||| || || | |||| | Sbjct 2173441 GCTGCAGCTGCTGCAGGGCCAGAACACCATGGAGTCGGAGAGGCCCTCGGCCGCCAAGCA 2173500 Query 108107 aaaTCGCTGGAAATACCGCTATGAGGTGACAGACACACTGTACCCTACCAGCAAGATGAA 108166 | |||||| | |||| | | |||||| || || | | || || | ||| ||| Sbjct 2173501 GCAGCGCTGGCAGTACCACCACGAGGTGGGCGAGACCATCTCCCGCACTGCCCAGAAGAA 2173560 Query 108167 GGACCCTCCCCCTGATAATTTACCCATGTTCACAGGGAATGCCTATTTTGTGGCCTCTCG 108226 || || || | | | ||||||||||| || | || || | | | || Sbjct 2173561 ACCGCCCCCGCCCCACAGCTACCCCATGTTCACGGGCAGCGCGTACAACGCCCTCACACG 2173620 Query 108227 AGCCTTTGTCCAACATGTCTTAGACAACCCTAAATCCCAAAGACTGGTTGAATGGGTCAA 108286 | ||| || || | |||| || ||||| | | | |||| | | || ||| ||| Sbjct 2173621 GGACTTCGTGCAGTACATCTTCGAGAACCCCACAGCACAAAAGTTCCTCGAGTGGTCCAA 2173680 Query 108287 AGACACCTATAGCCCCGACGAACACCTCTGGGCCACCCTTCAGCGTGCTCCGTGGATGCC 108346 |||||||| ||||| ||||| || ||||||||||||| | || ||| | |||| Sbjct 2173681 GGACACCTACAGCCCTGACGAGTACGTCTGGGCCACCCTGAACCGCATGCCGGGCGTGCC 2173740 Query 108347 ---TGGCTCTGTTCCT-AGCCACCCCAAGTATCACATCTCAGACATGACTGCCATCGCCA 108402 ||| | | ||| ||| | |||| || |||| ||||||| ||| | || Sbjct 2173741 GGGGGGCGC-GCCCCTCAGCGA---TAAGTTCCAGCTCTCGGACATGAACGCCCTTCCCC 2173796 Query 108403 GGCTCGTCAAGTGGCAGTACCACGAGGGAGATGTCAGCATGGGGGCGCCTTATGCACCCT 108462 | || ||||||||| |||||| ||||| || |||||| ||| ||||| || | |||| Sbjct 2173797 GCCTGGTCAAGTGGGAGTACCTGGAGGGGGACATCAGCAAGGGCGCGCCCTACCCGCCCT 2173856 Query 108463 GCTCTGGAATCCATCGGAGGGCCATCTGCATTTACGGGGCCGGGGACCTGTACTGGATTC 108522 || | || ||| | | | |||||||||| ||||||| || ||| || |||||| | Sbjct 2173857 GCACCGGCCGCCACCAGCGCTCCATCTGCATCTACGGGGTGGGCGACGTGCCCTGGATGC 2173916 Query 108523 TCCAGAACCATCACCTCTTGGCAAACAAGTTTGACCCGAGGGTGGATGATAACGTCCTGC 108582 | || | || || ||| |||| |||||||| ||||| |||||| ||| | | ||| Sbjct 2173917 TGCAACAACACCATCTCCTGGCCAACAAGTTCGACCCCGAGGTGGACGATGCGGCCGTGC 2173976 Query 108583 AGTGCTTAGAAGAGTACCTACGTCATAAGGCCATCTATGG 108622 |||| | || ||| |||| || || |||||| | || || Sbjct 2173977 AGTGTCTCGAGGAGCACCTGCGCCACAAGGCCCTGTACGG 2174016 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 348259033345674