Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Passer_20domesticus_20[genbank_20GCA_5F001700915.1_202016-08-31] 2,301 sequences; 1,042,720,703 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq10 98.7 8e-16 seq7 86.0 5e-12 >seq10 Length=11116859 Score = 98.7 bits (108), Expect = 8e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 || |||| ||| || || ||||| || || ||||||||||||| || || | || Sbjct 3464750 AGCACCAGGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCGTCC 3464809 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 |||| || ||||| || |||| || || || || || ||| | |||||||||||| Sbjct 3464810 TCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGGTCTGGGGGAATGCCTTCCTTATCC 3464869 Query 18234 GCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTT 18293 || | |||||| | ||| ||||||| ||||||| ||| | ||||||| | Sbjct 3464870 TGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCGACTTCCAGGGTGATGGTC 3464929 Query 18294 TTGCCGGTCAATGTTTTTACAAAAATTTGCAt 18325 ||||| |||| || || ||||| || ||||| Sbjct 3464930 TTGCCAGTCAGGGTCTTGACAAAGATCTGCAT 3464961 >seq7 Length=14042894 Score = 86.0 bits (94), Expect = 5e-12 Identities = 159/232 (69%), Gaps = 1/232 (0%) Strand=Plus/Plus Query 18094 GTTATCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGT 18153 |||| || ||||| || | || || | ||| || ||||| ||||| || |||||||||| Sbjct 12378435 GTTA-CCACCCCGCAGGCGCAGGACAAGGTGCAGAGTTGACTCTTTCTGGATGTTGTAGT 12378493 Query 18154 CGGCCATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCA 18213 | | || || | ||| |||| || ||||| ||| |||| || || || || || Sbjct 12378494 CAGACAGGGTGCGGCCATCCTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAG 12378553 Query 18214 CGGGCACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCT 18273 || | |||||| || || || | ||| || | ||| ||||||| ||||| Sbjct 12378554 GAGGGATGCCTTCTTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCACTGGGCT 12378613 Query 18274 CGGTTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAt 18325 || |||| ||||||| | ||||| |||| || || || || || ||||| Sbjct 12378614 CGACCTCAAGGGTGATGGTCTTGCCTGTCAGGGTCTTGACGAAGATCTGCAT 12378665 Score = 86.0 bits (94), Expect = 5e-12 Identities = 143/207 (69%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 18123 TGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGT 18182 || || || ||||| || || ||||||||||| | | || | ||| |||| || Sbjct 12378691 TGCAGGGTAGATTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCATCCTCCAGCTGC 12378750 Query 18183 TTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGT 18242 ||||| ||| |||| || || || || || ||| | ||||||||| || || | Sbjct 12378751 TTGCCAGCAAAGATCAGCCTCTGCTGGTCTGGGGGGATGCCTTCCTTGTCCTGGATCTTG 12378810 Query 18243 TGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGTC 18302 |||||| | ||| ||||| | ||||||| |||| ||||||| | ||||| ||| Sbjct 12378811 GCCTTGACATTCTCAATGGTGTCGCTGGGCTCGACCTCAAGGGTGATGGTCTTGCCTGTC 12378870 Query 18303 AATGTTTTTACAAAAATTTGCAttttt 18329 | || || || || || ||||||||| Sbjct 12378871 AGGGTCTTGACGAAGATCTGCATTTTT 12378897 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379333361890245