Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Passer_20domesticus_20[genbank_20GCA_5F001700915.1_202016-08-31] 2,301 sequences; 1,042,720,703 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq108 132 4e-26 seq7 96.9 3e-15 seq10 95.1 1e-14 >seq108 Length=148376 Score = 132 bits (146), Expect = 4e-26 Identities = 120/151 (79%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 23046 CCACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCG 23105 |||||||||| ||| |||||||| || || ||||| || || ||||| ||||| || | Sbjct 54036 CCACCTCGTCCTTGCTGGTGTACTCCACGATCTCGGTGCACAGGTTGCTGCACTTGATGG 54095 Query 23106 TGCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCG 23165 |||||| || ||||||||| || | ||||| || ||||||||||||||||| || | Sbjct 54096 TGCCCAGGTTCTGCTGGTTGCTCTTCCTGTTGCAGGAGTCCTTGTAGAGCATGTAGGGGG 54155 Query 23166 TGCCCGTCTCGACCTGCGACTCGATGATCGC 23196 |||| |||||| ||| ||||||||||| || Sbjct 54156 TGCCAGTCTCGGTCTGGGACTCGATGATGGC 54186 Score = 107 bits (118), Expect = 2e-18 Identities = 110/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 23352 TCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCGCACCTCCTCTT 23411 |||| || ||||| || ||||| || || ||||||| || | ||| ||| ||| |||| Sbjct 55278 TCATGAAGAGATCAGGGATCCAGAGGGCAAAGAACAGGTCCCTGGCTCGCTGCTCTTCTT 55337 Query 23412 TGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCACGGCTCGAGGT 23471 | || |||||||| ||||| |||| || || || | |||| ||||||||||| |||| Sbjct 55338 TCCCCGTGTTCTTCTTCAAGTCCAGGAACTCAAAGATGTCCAAGTGCCACGGCTCCAGGT 55397 Query 23472 AAACGGCAAACGCGCCCGGTCTCT 23495 | | |||||| || || ||||||| Sbjct 55398 AGATGGCAAAAGCCCCAGGTCTCT 55421 >seq7 Length=14042894 Score = 96.9 bits (106), Expect = 3e-15 Identities = 160/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 31189 AAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACC 31248 ||| ||||| || ||||| ||||| ||||||||||| || |||||| | || || || || Sbjct 12378897 AAAAATGCAGATCTTCGTCAAGACCCTGACAGGCAAGACCATCACCCTTGAGGTCGAGCC 12378838 Query 31249 GTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGA 31308 ||||| | || | ||||| | || ||||||||||||| | || || || Sbjct 12378837 CAGCGACACCATTGAGAATGTCAAGGCCAAGATCCAGGACAAGGAAGGCATCCCCCCAGA 12378778 Query 31309 CCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTA 31368 ||||||| | || || || |||||||| ||| |||| || || | || || Sbjct 12378777 CCAGCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAGGATGGCCGCACCCTCTCTGACTA 12378718 Query 31369 TAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 ||||| || || ||||| || || ||||| || || | ||||| || || Sbjct 12378717 CAACATCCAGAAGGAATCTACCCTGCATCTCGTGCTGCGCCTGAGAGGTGG 12378667 Score = 89.7 bits (98), Expect = 5e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| ||||| ||||||||||| || |||||| | || || || || Sbjct 12378665 ATGCAGATCTTCGTCAAGACCCTGACAGGCAAGACCATCACCCTTGAGGTCGAGCCCAGT 12378606 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | || | || || | || |||||| |||||| | || || |||||| Sbjct 12378605 GACACCATTGAGAACGTGAAGGCCAAGATCCAGGACAAAGAAGGCATCCCTCCTGACCAG 12378546 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||| | || || || |||||||| ||| |||| || || || || || ||| Sbjct 12378545 CAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAGGATGGCCGCACCCTGTCTGACTACAAC 12378486 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 || || ||||| || ||||| || || || || | ||| |||| |||| Sbjct 12378485 ATCCAGAAAGAGTCAACTCTGCACCTTGTCCTGCGCCTGCGGGGTGGTA 12378437 >seq10 Length=11116859 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || || || ||||| ||||| ||||| || |||||| | || || || || Sbjct 3464961 ATGCAGATCTTTGTCAAGACCCTGACTGGCAAGACCATCACCCTGGAAGTCGAGCCCAGT 3464902 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | || | ||||| | || ||| ||||||||| | || || |||||| Sbjct 3464901 GACACCATTGAGAATGTCAAGGCCAAGATCCAGGATAAGGAAGGCATTCCCCCAGACCAG 3464842 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||| | || || ||||||||||| ||| |||| ||| || || ||| || ||| Sbjct 3464841 CAGAGGCTGATCTTCGCTGGCAAGCAGCTGGAGGACGGGCGCACCCTGTCCGACTACAAC 3464782 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 || || || ||||| || || || ||||| || | || ||||| || Sbjct 3464781 ATCCAGAAGGAATCCACCCTGCACCTGGTGCTGCGCCTCAGGGGTGG 3464735 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 |||||||| || || || ||||| ||||| ||||| || |||||| | || ||||| || Sbjct 3465753 AACATGCAGATCTTTGTCAAGACCCTGACTGGCAAGACCATCACCCTTGAGGTTGAGCCC 3465694 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 |||| | || | || || | || ||||||||||||| | || || ||| Sbjct 3465693 AGTGACACCATTGAGAACGTGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCTCCTGAC 3465634 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTAT 31369 |||||| | || || || || || || ||| |||| ||| || || |||||| Sbjct 3465633 CAGCAGAGGCTGATCTTTGCAGGGAAGCAGCTGGAGGACGGGCGCACCCTGTCTGATTAT 3465574 Query 31370 AACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 ||||| || || ||||| || || || ||||| || | ||||| || || Sbjct 3465573 AACATCCAGAAGGAATCCACCCTGCACCTGGTGCTGCGCCTGAGAGGTGG 3465524 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445753578643920