Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Passer_20domesticus_20[genbank_20GCA_5F001700915.1_202016-08-31] 2,301 sequences; 1,042,720,703 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq12 123 3e-23 seq22 111 2e-19 seq11 84.2 3e-11 >seq12 Length=147836772 Score = 123 bits (136), Expect = 3e-23 Identities = 109/136 (80%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 33604 CCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33663 |||| ||||| ||||| | ||| || || || || | ||| ||||| ||||| | ||| | Sbjct 20187052 CCTCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAATCCAGGCATCAGGCCCCTCTTCT 20187111 Query 33664 TAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33723 | ||||||||||| | |||||| || || ||||||||||| ||||| ||||||||||||| Sbjct 20187112 TCAGCCAAAATATAGCAGCGAAGGAACCCGAAAAGAAGATGCCTTCCACTGCAGCAAAGG 20187171 Query 33724 CAATAAGTCTCTCTCC 33739 ||| | |||||| || Sbjct 20187172 CAACCACTCTCTCACC 20187187 Score = 87.8 bits (96), Expect = 2e-12 Identities = 71/86 (83%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 33969 TTTTCATTCACTATTCCATCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATAT 34028 |||||||| || |||||||||||||||||||||||||||| ||||| ||||| ||| Sbjct 20191763 TTTTCATTTACAATTCCATCACTGGCTGCAAAAAACGCCAGAACATGAGAGATAAAGTAT 20191822 Query 34029 TTTTCGTCTGGTGTTAGTTTATTCCA 34054 ||||| |||| | | || || ||||| Sbjct 20191823 TTTTCATCTGCTTTCAGCTTGTTCCA 20191848 >seq22 Length=110987800 Score = 111 bits (122), Expect = 2e-19 Identities = 97/121 (80%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 33604 CCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33663 |||| |||||||| || | ||| |||||||| |||||||| ||||||| || | || | Sbjct 97729178 CCTCATCTCTACTGATGAGTTCATTAGAAAAAGTGAGTCCAGGCATTAATCCTCTTTTCT 97729119 Query 33664 TAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33723 | |||||||| || || || || || || ||||||||||||||||| || || ||||||| Sbjct 97729118 TCAGCCAAAAAATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACAGCTGCAAAGG 97729059 Query 33724 C 33724 | Sbjct 97729058 C 97729058 Score = 86.0 bits (94), Expect = 8e-12 Identities = 76/95 (80%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 33276 GACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCT 33335 ||||| |||||||| | ||||||||||| || || || || || ||||| || || ||| Sbjct 97730384 GACATGACTCCCATCCTCTGGTATTCACCTACTCGCTTCTCAAAGAAATTTGTCTTGCCT 97730325 Query 33336 TCCAATGATATATTTTCCATGAAATCAAACGGATT 33370 |||| || || ||||||||||| ||||| ||||| Sbjct 97730324 TCCAGAGAGATGTTTTCCATGAAGTCAAAAGGATT 97730290 >seq11 Length=69873230 Score = 84.2 bits (92), Expect = 3e-11 Identities = 89/115 (77%), Gaps = 2/115 (2%) Strand=Plus/Minus Query 188494 TTTCTATGATG-CGCGTATCGTTATACAAGCTTTCATGTTGACTACTGCAGTGTTTCTTG 188552 ||||| ||||| ||| ||||| | |||||||| || | |||||||| || ||||||| Sbjct 31270036 TTTCTGTGATGTCGCC-ATCGTCTTGCAAGCTTTTATTCTTACTACTGCTGTATTTCTTG 31269978 Query 188553 CTCTGACTACATGTACTCTACAATCAAAGAGAGATTTCAGTAAACTTGTAACAGG 188607 ||||| ||| ||| | |||||||||||||| ||||| ||| ||| | |||| Sbjct 31269977 GATTGACTGCATATACCTTGCAATCAAAGAGAGACTTCAGCAAATTTGGAGCAGG 31269923 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629799484871280