Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Passer_20domesticus_20[genbank_20GCA_5F001700915.1_202016-08-31] 2,301 sequences; 1,042,720,703 total letters Query= NC_006150.1 Length=221454 Score E Sequences producing significant alignments: (Bits) Value seq27 179 5e-40 seq8 122 1e-22 >seq27 Length=49693984 Score = 179 bits (198), Expect = 5e-40 Identities = 218/297 (73%), Gaps = 0/297 (0%) Strand=Plus/Minus Query 8679 GGAACGCGGCCAACGGACACCCTTTGACGTTGCTACAGACTAGAGACTGGATAGTTGCAC 8738 |||| || | || ||||| || ||||||||| | |||| || ||| | | || Sbjct 22296659 GGAAGGCAGTGAAGGGACAGCCCTTGACGTTGTTGCAGATGAGCTTCTGCAGGGAGGCCG 22296600 Query 8739 TCTTGACGATCCCAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGG 8798 | |||||||| | || ||||| | || |||||||||||||| |||||||| | |||| Sbjct 22296599 TGTTGACGATGTCGAAGCCCACCTTGCCCCCGAAGGTGCTGGGCTTCCAGTACTCAGGGG 22296540 Query 8799 AGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGC 8858 |||||||| |||| |||| || || || ||||| || |||||||||| ||| | ||| Sbjct 22296539 AGCAGATGGCGTTGCCCATCAGCCCCTTCAGGGAGAAGGGAGCCCCCATCTCCACCATGG 22296480 Query 8859 TCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCA 8918 |||| || |||||||| ||| |||||||| ||||||| | || | ||||| ||||| Sbjct 22296479 TCTCGCCAAAGATGGCCCCGGGCCGGGGCTTCTCCACCAGCAGGCCTGGGTACAGCTCCA 22296420 Query 8919 CAGCCTCGATGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATTTCCTTTTCTCCTG 8975 || || ||||| ||||| || || || || || || || || |||||||||| Sbjct 22296419 TGGCATCAATGTCCCCGTACAGCTCCTCCAGCTCCGCTGCCATCTCTTTTTCTCCTG 22296363 Score = 98.7 bits (108), Expect = 1e-15 Identities = 174/254 (69%), Gaps = 0/254 (0%) Strand=Plus/Minus Query 9610 TCCCCGATAATGATGAGTCGAGTGGTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGT 9669 || ||||| | | ||| || | |||||| || || || ||||| ||| || || || Sbjct 22294728 TCACCGATCAGAACGAGCCGGGCGGTCTGGAAGAGCTGCTCGTCGTCCCACTCGGGGTGC 22294669 Query 9670 TCTCGTTTCAGAACATCGCACACTCTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATC 9729 | | || || || ||||| || | |||||| || | |||||||| || ||||||||| Sbjct 22294668 TGGTGCTTGAGCACGTCGCAGACGCGGTTGTGCTCGCGCAGCCAGATGGTGGCGTACATC 22294609 Query 9730 ATGAGACCAGGCACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATATTTTCGGGC 9789 || || || |||||||| || || |||| || || || | | |||| | |||||| Sbjct 22294608 ATCAGCCCCGGCACCAGCCCGAACACCTCCTGCCCCACGGAGAACCGCAGGTGCTCGGGC 22294549 Query 9790 ACTTCGGGAGGATAGATCATGTGCACCTGGACATCTTTGACCGAGGGGGGATACATTTCA 9849 || | ||| || || | ||| | |||| || |||| || || |||||||| Sbjct 22294548 ACGTGGGGCGGGTACAGCATCTCTGCCTGCGTGTCCCGCACCGTCGGCGGGTACATTTCT 22294489 Query 9850 CCGTCAATAATCTG 9863 |||| || ||||| Sbjct 22294488 CCGTTGATCATCTG 22294475 Score = 87.8 bits (96), Expect = 3e-12 Identities = 111/153 (73%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 10287 TCACCTTTGACCCCAAGAGGAGTTGGACAATCGTGAGGAACCGGAGGTAGAATCCTTGCG 10346 |||||||| || || | || ||||| || || | || ||||| || | |||| | Sbjct 22292861 TCACCTTTAACACCCATTGGTGTTGGGCAGTCAAGTCCTACTGGAGGAAGGCTTCTTGTG 22292802 Query 10347 TAATAGGAGAGATTGGAGAAAGCTTCCCAGCTTGGGTATTCGTAGTCCGCGTTGTAGATG 10406 || ||||| |||||||| |||||||||||||| ||| | |||||| ||||| | Sbjct 22292801 TAGTAGGAAAGATTGGAATAAGCTTCCCAGCTTTTGTAATTGTAGTCACTATTGTAAGTT 22292742 Query 10407 GGAGGGCTGTCAATCAAATCGGATCTACCTGAA 10439 || |||||||||||||| | || || ||||| Sbjct 22292741 GGTGGGCTGTCAATCAAGTGTGACCTTGCTGAA 22292709 >seq8 Length=11241730 Score = 122 bits (134), Expect = 1e-22 Identities = 189/270 (70%), Gaps = 0/270 (0%) Strand=Plus/Plus Query 8671 GGGAACTCGGAACGCGGCCAACGGACACCCTTTGACGTTGCTACAGACTAGAGACTGGAT 8730 ||| || ||||||| | |||| ||| || |||||| || || || || || Sbjct 2353899 GGGCACGTGGAACGCCACGTACGGGCACTTCTTCACGTTGAGGCACACGAGCTTCTCGAG 2353958 Query 8731 AGTTGCACTCTTGACGATCCCAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTA 8790 | || |||| |||||| |||| || |||| || || || |||||||||||||| Sbjct 2353959 GGACGCCGTCTTCACGATCTCAAAGCCAGTTGCTCCACCAAATGTACTGGGTTTCCAGTA 2354018 Query 8791 ACCCGGGGAGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTC 8850 | |||||||||||| || | | || || || |||||||| ||||| || | ||| Sbjct 2354019 CTCTGGGGAGCAGATGGGATTGCCAAAAAGCCCCTTCAGGGAAAATGGAGCTCCGATCTC 2354078 Query 8851 GAGAATGCTCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTA 8910 | ||||| || || || ||| | ||||| |||| ||||||| || || || | ||| Sbjct 2354079 CACCATGCTTTCCCCAAAAATGCCATTGGGTTGGGGTTTTTCCAGCAGCAAGCCTGGGTA 2354138 Query 8911 CAACTCCACAGCCTCGATGTCTCCGTAAAG 8940 ||||||| ||| || |||||||| || || Sbjct 2354139 AAACTCCAGAGCATCAATGTCTCCATACAG 2354168 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 708504421055440