Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Passer_20domesticus_20[genbank_20GCA_5F001700915.1_202016-08-31] 2,301 sequences; 1,042,720,703 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq7 122 8e-23 seq10 118 1e-21 seq108 113 4e-20 >seq7 Length=14042894 Score = 122 bits (134), Expect = 8e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| | || |||||||| | ||| | ||| || ||||| || |||||||| || Sbjct 12378667 CCACCTCTCAGGCGCAGCACGAGATGCAGGGTAGATTCCTTCTGGATGTTGTAGTCAGAG 12378726 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| ||||| ||||||||||| || |||| | | ||||||||| || ||| Sbjct 12378727 AGGGTGCGGCCATCCTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCTGGGGGG 12378786 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||| ||||| ||| || ||||| | ||| | || ||| ||| ||||| Sbjct 12378787 ATGCCTTCCTTGTCCTGGATCTTGGCCTTGACATTCTCAATGGTGTCGCTGGGCTCGACC 12378846 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||| | ||| || || || || || || ||||| |||||||| Sbjct 12378847 TCAAGGGTGATGGTCTTGCCTGTCAGGGTCTTGACGAAGATCTGCAT 12378893 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| |||| ||||| || | || | || ||||| || || |||||||| || | Sbjct 12378439 CCACCCCGCAGGCGCAGGACAAGGTGCAGAGTTGACTCTTTCTGGATGTTGTAGTCAGAC 12378498 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| ||||| ||||||||||| || |||| | | ||||||||| |||||| Sbjct 12378499 AGGGTGCGGCCATCCTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGG 12378558 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||||||||| ||| || ||| | | ||| | || || ||| ||||| Sbjct 12378559 ATGCCTTCTTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCACTGGGCTCGACC 12378618 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||| | ||| || || || || || || ||||| |||||||| Sbjct 12378619 TCAAGGGTGATGGTCTTGCCTGTCAGGGTCTTGACGAAGATCTGCAT 12378665 >seq10 Length=11116859 Score = 118 bits (130), Expect = 1e-21 Identities = 155/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 131020 CGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAG 131079 |||||||| | || | ||| || ||||| || |||||||| ||| || ||||||| | Sbjct 3464747 CGCAGCACCAGGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCG 3464806 Query 131080 TCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTG 131139 ||||| ||||||||||| ||| |||| | | ||||||||| || || || ||||| || Sbjct 3464807 TCCTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGGTCTGGGGGAATGCCTTCCTTA 3464866 Query 131140 TCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACG 131199 || ||| || ||||| | ||| | || || ||| ||||| || | ||| | | Sbjct 3464867 TCCTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCGACTTCCAGGGTGATG 3464926 Query 131200 GTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || || || || || || || || || |||||||| Sbjct 3464927 GTCTTGCCAGTCAGGGTCTTGACAAAGATCTGCAT 3464961 >seq108 Length=148376 Score = 113 bits (124), Expect = 4e-20 Identities = 103/130 (79%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 145668 TGTATTGTACGATCTCGGCGCACAAATTGCTACATTTGATGGTTCCCAGATTTTGCTGAT 145727 |||| | |||||||||| ||||| ||||| || |||||||| ||||| || ||||| | Sbjct 54054 TGTACTCCACGATCTCGGTGCACAGGTTGCTGCACTTGATGGTGCCCAGGTTCTGCTGGT 54113 Query 145728 TACTTTTCCTGTTGCACGCGTCCTTGTAGAGCATGTACGGTCCGCCAGTCTCCACCTGCG 145787 | || ||||||||||| | |||||||||||||||||| || ||||||||| ||| | Sbjct 54114 TGCTCTTCCTGTTGCAGGAGTCCTTGTAGAGCATGTAGGGGGTGCCAGTCTCGGTCTGGG 54173 Query 145788 TCTCCACGAT 145797 ||| | ||| Sbjct 54174 ACTCGATGAT 54183 Score = 82.4 bits (90), Expect = 7e-11 Identities = 108/150 (72%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 145330 GGCGAGCTCGCAACTCGCCTCCAGAGCGCCGAAATAAATTGTCTCGGCAATTTGCCTGTT 145389 ||| |||||||| || |||||||| || ||| | || || |||||| || ||| ||| Sbjct 51573 GGCCAGCTCGCAGCTGGCCTCCAGGGCCCCGTAGTAGATGGTCTCGAAGATGTGCTGGTT 51632 Query 145390 GAGCAGCATCGCTTCATCGCTCTCGTACGGCATGCGCAGCAGTACAAAAGCATCGGCGAG 145449 ||| || ||| || |||||||| | || | |||| || | || || ||||| || Sbjct 51633 GAGGCGCTGCGCCTCGGCGCTCTCGAAGGGGAACCGCATGAGGATGAAGGCGTCGGCCAG 51692 Query 145450 CCCCTGTATTCCCACGCCGATGGGCCGATG 145479 ||||| | || | |||||||||||| || Sbjct 51693 GCCCTGCACGCCGATGCCGATGGGCCGGTG 51722 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471999223731840