Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Passer_20domesticus_20[genbank_20GCA_5F001700915.1_202016-08-31] 2,301 sequences; 1,042,720,703 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq10 107 2e-18 seq7 105 5e-18 >seq10 Length=11116859 Score = 107 bits (118), Expect = 2e-18 Identities = 154/215 (72%), Gaps = 4/215 (2%) Strand=Plus/Plus Query 16723 CAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTC 16782 ||| |||| ||||| ||||| ||||| || ||||||||||||| || ||| |||| Sbjct 3464749 CAGCACCAGGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCGTC 3464808 Query 16783 CTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC 16842 ||||| || ||||| || | || |||| ||| ||||| || | ||| || || || Sbjct 3464809 CTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGGTCTGGGGGAATGCCTTCCTTATC 3464868 Query 16843 --GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATG 16900 || || || ||| || | | | ||||| | |||||| ||||| ||||||| Sbjct 3464869 CTGGATCTTGGC--CTTGACATTCTCAATGGTGTCACTGGGCTCGACTTCCAGGGTGATG 3464926 Query 16901 GTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || || || ||||| || |||||||| |||||||| Sbjct 3464927 GTCTTGCCAGTCAGGGTCTTGACAAAGATCTGCAT 3464961 Score = 102 bits (112), Expect = 7e-17 Identities = 161/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || |||| || | ||| |||| ||||| || ||||| || || ||||||||||||| | Sbjct 3464507 CCACCTCTCAGGCGCAGCACCAGGTGCAGAGTTGACTCTTTCTGGATGTTGTAGTCGGAC 3464566 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| ||||||||| || || || ||| | || |||| ||| ||||| ||| Sbjct 3464567 AGGGTGCGCCCGTCCTCCAGCTGCTTCCCTGCAAAGATCAGCCTCTGCTGGTCAGGAGGA 3464626 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | ||| || || || || || || |||||| | | | ||||| | ||||||| Sbjct 3464627 ATGCCTTCCTTATCCTGGATCTTGGC--CTTCACGTTCTCAATGGTGTCACTGGGCTCCA 3464684 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || | ||||||||| || || ||||| || || || || |||||||| Sbjct 3464685 CCTCGAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 3464733 Score = 89.7 bits (98), Expect = 4e-13 Identities = 150/215 (70%), Gaps = 4/215 (2%) Strand=Plus/Plus Query 16723 CAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTC 16782 ||| |||| ||||| ||||| ||||| || ||||||||||| | | ||| |||| Sbjct 3464977 CAGCACCAGGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGCCCGTC 3465036 Query 16783 CTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC 16842 ||||| || || || ||| | || |||| ||| ||||| ||| | || || ||||| Sbjct 3465037 CTCCAGCTGCTTCCCTGCAAAGATCAGCCTCTGCTGGTCAGGAGGGATACCTTCCTTGTC 3465096 Query 16843 --GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATG 16900 || || || ||| || | | | ||||| | ||||||| || | ||||||| Sbjct 3465097 CTGGATCTTGGC--CTTGACATTCTCAATGGTGTCACTGGGCTCCACCTCGAGGGTGATG 3465154 Query 16901 GTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || || || ||||| || || || || |||||||| Sbjct 3465155 GTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 3465189 Score = 86.0 bits (94), Expect = 5e-12 Identities = 149/215 (69%), Gaps = 4/215 (2%) Strand=Plus/Plus Query 16708 CCCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGC 16767 ||| |||| || | ||| |||| ||||| ||||| ||||| || ||||||||||||| Sbjct 3465190 CCCACCTCTCAGGCGCAGCACCAGGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCGGA 3465249 Query 16768 CATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGG 16827 || ||| ||||||||| || || || ||| | || |||| ||| ||||| || Sbjct 3465250 CAGGGTGCGCCCGTCCTCCAGCTGCTTCCCTGCAAAGATCAGCCTCTGCTGGTCTGGGGG 3465309 Query 16828 CACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCC 16885 | ||| || || || || || || ||| || | | | ||||| | ||||||| Sbjct 3465310 AATGCCTTCCTTATCCTGGATCTTGGC--CTTGACATTCTCAATGGTGTCACTGGGCTCC 3465367 Query 16886 GTTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTT 16920 || | ||||||||| || || ||||| || || Sbjct 3465368 ACCTCGAGGGTGATGGTCTTGCCAGTCAGGGTCTT 3465402 >seq7 Length=14042894 Score = 105 bits (116), Expect = 5e-18 Identities = 162/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || || || | ||| || | ||||| || ||||| || || ||||||||||| | | Sbjct 12378439 CCACCCCGCAGGCGCAGGACAAGGTGCAGAGTTGACTCTTTCTGGATGTTGTAGTCAGAC 12378498 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| | | ||||||| || ||||| ||| | || |||| ||| ||||| ||| Sbjct 12378499 AGGGTGCGGCCATCCTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGG 12378558 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | ||| |||||||| || || || |||||| | | | ||||| | |||||| Sbjct 12378559 ATGCCTTCTTTGTCCTGGATCTTGGC--CTTCACGTTCTCAATGGTGTCACTGGGCTCGA 12378616 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || | ||||||||| || || ||||| || ||||| || |||||||| Sbjct 12378617 CCTCAAGGGTGATGGTCTTGCCTGTCAGGGTCTTGACGAAGATCTGCAT 12378665 Score = 104 bits (114), Expect = 2e-17 Identities = 164/233 (70%), Gaps = 4/233 (2%) Strand=Plus/Plus Query 16708 CCCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGC 16767 ||| |||| || | ||| || | |||||| || || ||||| || ||||||||||| | Sbjct 12378666 CCCACCTCTCAGGCGCAGCACGAGATGCAGGGTAGATTCCTTCTGGATGTTGTAGTCAGA 12378725 Query 16768 CATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGG 16827 | ||| | | ||||||| || ||||| ||| | || |||| ||| ||||| || Sbjct 12378726 GAGGGTGCGGCCATCCTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCTGGGGG 12378785 Query 16828 CACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCC 16885 | ||| || ||||| || || || ||| || | | | ||||||| |||||| Sbjct 12378786 GATGCCTTCCTTGTCCTGGATCTTGGC--CTTGACATTCTCAATGGTGTCGCTGGGCTCG 12378843 Query 16886 GTTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTT 16938 || | ||||||||| || || ||||| || ||||| || ||||||||||| Sbjct 12378844 ACCTCAAGGGTGATGGTCTTGCCTGTCAGGGTCTTGACGAAGATCTGCATTTT 12378896 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405076639939990