Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Passer_20domesticus_20[genbank_20GCA_5F001700915.1_202016-08-31] 2,301 sequences; 1,042,720,703 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq108 159 7e-34 seq12 93.3 8e-14 seq22 84.2 4e-11 >seq108 Length=148376 Score = 159 bits (176), Expect = 7e-34 Identities = 176/232 (76%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 244318 CAGCCCCTTGCTGACGGGGCTGCCCTCGTAGGTCGGGTAGGGACCGTCGCGCTGGGCCAG 244377 || ||||||||||||||| ||||| |||||| ||||| || | | ||||||| Sbjct 51519 CACCCCCTTGCTGACGGGCGAGCCCTGGTAGGTGTCATAGGGGCCCTGCTCCCGGGCCAG 51578 Query 244378 CTTACAGCTCTCGTCGAGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTTGTTCATGTC 244437 || ||||| | || ||||| |||||||||||||||||||||| || ||| | | | Sbjct 51579 CTCGCAGCTGGCCTCCAGGGCCCCGTAGTAGATGGTCTCGAAGATGTGCTGGTTGA-GGC 51637 Query 244438 GC-GGGCCTTGCCGCAGGTGAAGGGGATGCCCATCATCATGAAGACGTCGGCCAGTCCCT 244496 || | |||| | ||| |||||||| | ||| | |||||| |||||||||| |||| Sbjct 51638 GCTGCGCCTCGGCGCTCTCGAAGGGGAACCGCATGAGGATGAAGGCGTCGGCCAGGCCCT 51697 Query 244497 GCACGCCGATGCCGATGGGTCTGTGTCGCTTGTTGGAGCGCATGGCTTCGGG 244548 ||||||||||||||||||| | ||| ||| |||||||||| ||| | ||| Sbjct 51698 GCACGCCGATGCCGATGGGCCGGTGCCGCCGGTTGGAGCGCTCGGCCTGGGG 51749 Score = 143 bits (158), Expect = 5e-29 Identities = 156/207 (75%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 244704 CCACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGAGGTTACTGCACTTGATGG 244763 ||||||| ||| | ||||||||| || ||||||||||| ||||| ||||||||||||| Sbjct 54036 CCACCTCGTCCTTGCTGGTGTACTCCACGATCTCGGTGCACAGGTTGCTGCACTTGATGG 54095 Query 244764 TGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCTTGTAGAGCATGAAGGGCC 244823 ||||||||| ||| || ||| ||| |||||||| |||||||||||||||| |||| Sbjct 54096 TGCCCAGGTTCTGCTGGTTGCTCTTCCTGTTGCAGGAGTCCTTGTAGAGCATGTAGGGGG 54155 Query 244824 CCCCGGTCTCGAGCTGGGCGACGAGGACGCTGTTCCAGAGGTCCCTAGCCTTGACCGTCC 244883 || |||||| ||||| ||| || | || |||||| | | ||||| ||| || Sbjct 54156 TGCCAGTCTCGGTCTGGGACTCGATGATGGCGTACCAGAGCTGCTGGGCCTTCACCACCC 54215 Query 244884 TGCGAGCCTTGCCCTCTGCCTCGTAGC 244910 |||| | ||||| |||||||| Sbjct 54216 TGCGCACGCGGCCCTGCCGCTCGTAGC 54242 Score = 109 bits (120), Expect = 1e-18 Identities = 102/130 (78%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 245003 ACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGAGGTCCCTGGTCCTCTGC 245062 || |||| ||||||||| || |||||||||||||| ||| |||||||||| | |||| Sbjct 55271 ACTCTCTTCATGAAGAGATCAGGGATCCAGAGGGCAAAGAACAGGTCCCTGGCTCGCTGC 55330 Query 245063 TCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGACGTCGACGTGCCAGGGC 245122 || || || ||||||||| ||| |||| || ||||||| ||| | |||||| ||| Sbjct 55331 TCTTCTTTCCCCGTGTTCTTCTTCAAGTCCAGGAACTCAAAGATGTCCAAGTGCCACGGC 55390 Query 245123 TCCATGTAGA 245132 |||| ||||| Sbjct 55391 TCCAGGTAGA 55400 >seq12 Length=147836772 Score = 93.3 bits (102), Expect = 8e-14 Identities = 102/136 (75%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 42696 GGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCC 42755 || ||||| |||| |||||| | || || || ||||||||||| ||||| ||||||| Sbjct 20187187 GGTGAGAGAGTGGTTGCCTTTGCTGCAGTGGAAGGCATCTTCTTTTCGGGTTCCTTCGCT 20187128 Query 42756 TCCATCTTCTGGCTCAAGCAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTC 42815 | || || ||||| ||| ||| || |||||| ||| | || ||||| || ||||| Sbjct 20187127 GCTATATTTTGGCTGAAGAAGAGGGGCCTGATGCCTGGATTGACTTTCTCCAATGAACTT 20187068 Query 42816 ATCAGCAGGGACGAGG 42831 || ||||| || |||| Sbjct 20187067 ATTAGCAGAGATGAGG 20187052 >seq22 Length=110987800 Score = 84.2 bits (92), Expect = 4e-11 Identities = 94/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 42706 TGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCT 42765 ||||||||||| | || || || || |||||||| || ||| | || || || || || | Sbjct 97729053 TGGTAGCCTTTGCAGCTGTGGAAGGAATCTTCTTTTCTGGCTCTTTTGCATCAATTTTTT 97729112 Query 42766 GGCTCAAGCAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGG 42825 |||| ||| | | | | ||||| |||||||| || || || ||||||||||| || | Sbjct 97729113 GGCTGAAGAAAAGAGGATTAATGCCTGGACTCACTTTTTCTAATGAACTCATCAGTAGAG 97729172 Query 42826 ACGAGG 42831 | |||| Sbjct 97729173 ATGAGG 97729178 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944312038443760