Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Passer_20domesticus_20[genbank_20GCA_5F001700915.1_202016-08-31] 2,301 sequences; 1,042,720,703 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq10 132 1e-25 seq7 123 6e-23 >seq10 Length=11116859 Score = 132 bits (146), Expect = 1e-25 Identities = 144/191 (75%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 ||||| ||||| || ||||||| || ||||| ||||| || | || || ||||| ||| Sbjct 3464543 TCTTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCGTCCTCCAGCTGCTTCCCTGCAAAG 3464602 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 ||||| | ||| || | || || ||||| ||||||||||| || || |||||||| Sbjct 3464603 ATCAGCCTCTGCTGGTCAGGAGGAATGCCTTCCTTATCCTGGATCTTGGCCTTCACGTTC 3464662 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | || || | || || ||||| ||||| ||||| || ||||| ||||| ||| Sbjct 3464663 TCAATGGTGTCACTGGGCTCCACCTCGAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACG 3464722 Query 288463 AATATCTGCAT 288473 || |||||||| Sbjct 3464723 AAGATCTGCAT 3464733 Score = 127 bits (140), Expect = 5e-24 Identities = 167/230 (73%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| | ||| | || || || || | ||| ||| || ||||| || ||||||| Sbjct 3464735 CCACCCCTGAGGCGCAGCACCAGGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCGGAC 3464794 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || ||||| ||||| || | || || || ||||||||||| | ||| || |||||| Sbjct 3464795 AGGGTGCGCCCGTCCTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTG---GTCTGGG 3464851 Query 288367 ---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 || ||||| ||||||||||| || || || || || || || | || || | || Sbjct 3464852 GGAATGCCTTCCTTATCCTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCG 3464911 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| || ||||| ||||| || ||||| |||||||| || |||||||| Sbjct 3464912 ACTTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTGACAAAGATCTGCAT 3464961 Score = 105 bits (116), Expect = 2e-17 Identities = 132/180 (73%), Gaps = 6/180 (3%) Strand=Plus/Plus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||| || ||||| || ||||||| || ||||| ||||| || | || || ||||| || Sbjct 3465226 TTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCGTCCTCCAGCTGCTTCCCTGCAAA 3465285 Query 288342 GATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCAC 288398 |||||| | ||| || |||||| || ||||| ||||||||||| || || || || Sbjct 3465286 GATCAGCCTCTGCTGG---TCTGGGGGAATGCCTTCCTTATCCTGGATCTTGGCCTTGAC 3465342 Query 288399 GTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTT 288458 || || || | || || | || || ||||| ||||| ||||| || ||||| ||||| Sbjct 3465343 ATTCTCAATGGTGTCACTGGGCTCCACCTCGAGGGTGATGGTCTTGCCAGTCAGGGTCTT 3465402 Score = 93.3 bits (102), Expect = 1e-13 Identities = 143/203 (70%), Gaps = 6/203 (3%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| | ||| | || || || || | ||| ||| || ||||| ||||| || | Sbjct 3464186 CCACCCCTGAGGCGCAGCACCAGGTGCAGGGTGGATTCCTTCTGGATGTTATAATCAGAC 3464245 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || ||||| || ||||| | || || ||||| |||||||| | ||| || |||||| Sbjct 3464246 AGGGTGCGGCCATCTTCCAGCTGCTTCCCTGCAAAGATCAGCCTCTGCTGG---TCTGGG 3464302 Query 288367 ---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 || ||||| ||||||||||| || || || || || || || | || || | || Sbjct 3464303 GGAATGCCTTCCTTATCCTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCC 3464362 Query 288424 ACTTCGAGCGTGATCGTCTTCCC 288446 || ||||| ||||| ||||| || Sbjct 3464363 ACCTCGAGGGTGATGGTCTTGCC 3464385 >seq7 Length=14042894 Score = 123 bits (136), Expect = 6e-23 Identities = 142/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 ||||| ||||| || ||||| | || ||||| || || || | || || || || ||| Sbjct 12378475 TCTTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCCTCCAGCTGCTTGCCAGCAAAG 12378534 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 ||||| | ||| || | ||||| |||||||| |||||||| || || |||||||| Sbjct 12378535 ATCAGCCTCTGCTGGTCAGGAGGGATGCCTTCTTTGTCCTGGATCTTGGCCTTCACGTTC 12378594 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | || || | || || || || ||||| ||||| || ||||| ||||||||| Sbjct 12378595 TCAATGGTGTCACTGGGCTCGACCTCAAGGGTGATGGTCTTGCCTGTCAGGGTCTTGACG 12378654 Query 288463 AATATCTGCAT 288473 || |||||||| Sbjct 12378655 AAGATCTGCAT 12378665 Score = 120 bits (132), Expect = 7e-22 Identities = 157/216 (73%), Gaps = 6/216 (3%) Strand=Plus/Plus Query 288262 AGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCT 288321 || |||||||| | || ||| || ||||| || ||||| | ||| ||||| || || Sbjct 12378682 AGCACGAGATGCAGGGTAGATTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCATCC 12378741 Query 288322 TCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTA 288378 || | || || || || |||||||| | ||| || |||||| || ||||| || Sbjct 12378742 TCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGG---TCTGGGGGGATGCCTTCCTTG 12378798 Query 288379 TCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATC 288438 |||||||| || || || || || || || | ||||| | || || || || ||||| Sbjct 12378799 TCCTGGATCTTGGCCTTGACATTCTCAATGGTGTCGCTGGGCTCGACCTCAAGGGTGATG 12378858 Query 288439 GTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 ||||| || ||||| ||||||||||| ||||||||| Sbjct 12378859 GTCTTGCCTGTCAGGGTCTTGACGAAGATCTGCATT 12378894 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179619621945078