Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Passer_20domesticus_20[genbank_20GCA_5F001700915.1_202016-08-31] 2,301 sequences; 1,042,720,703 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq108 93.3 5e-14 >seq108 Length=148376 Score = 93.3 bits (102), Expect = 5e-14 Identities = 100/131 (76%), Gaps = 6/131 (5%) Strand=Plus/Plus Query 113915 AACTCACCCGCGAGGG---TGCGTCTCAGATAGATATTGGTCGTGTATGGCTCAAAGCAC 113971 ||||| |||| |||| ||||| | ||||| ||| | ||||| ||||| | | || Sbjct 49388 AACTCCCCCGAGAGGACCCTGCGTGTG---TAGATGTTGCTGGTGTAGGGCTCGATGGAC 49444 Query 113972 TCATTGTTACCCAAGATTTGGGCGGTGGAGGCTGTGGGCATGGGTGCCATGAGAAGGCTG 114031 || ||||| |||| ||| ||||| |||||||| ||||||||||| | ||||| |||||| Sbjct 49445 TCGTTGTTGCCCAGGATCTGGGCAGTGGAGGCCGTGGGCATGGGGGAAATGAGCAGGCTG 49504 Query 114032 TTACGGAGACC 114042 || | || ||| Sbjct 49505 TTCCTGACACC 49515 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597336418617080