Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Passer_20domesticus_20[genbank_20GCA_5F001700915.1_202016-08-31] 2,301 sequences; 1,042,720,703 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq108 107 2e-18 >seq108 Length=148376 Score = 107 bits (118), Expect = 2e-18 Identities = 105/133 (79%), Gaps = 2/133 (2%) Strand=Plus/Minus Query 95078 ACGGTGTGAAAAACGCGCTGCTTGTGGCCCCCATGCCCACGGCCTCCACGGCGCAGATCC 95137 ||||||| | ||| ||||| | |||||||||||||||||||||| || ||||||| Sbjct 49517 ACGGTGTCAGGAACAGCCTGCTCATTTCCCCCATGCCCACGGCCTCCACTGCCCAGATCC 49458 Query 95138 TTGGCAACAACGAGTCGTTCGAACCCTTCACCTCCAACGTGTACAACAGGC-GGGTGCTC 95196 | |||||||||||||| |||| |||| |||| |||| | ||| ||| || |||| ||| Sbjct 49457 TGGGCAACAACGAGTCCATCGAGCCCTACACCAGCAACATCTAC-ACACGCAGGGTCCTC 49399 Query 95197 GCCGGGGAATTCC 95209 | ||||| |||| Sbjct 49398 TCGGGGGAGTTCC 49386 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494708970523960