Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Passer_20domesticus_20[genbank_20GCA_5F001700915.1_202016-08-31] 2,301 sequences; 1,042,720,703 total letters Query= NC_011335.1 Length=119343 Score E Sequences producing significant alignments: (Bits) Value seq25 87.8 1e-12 >seq25 Length=35007241 Score = 87.8 bits (96), Expect = 1e-12 Identities = 116/161 (72%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 108464 AGTGGGTGCTCGATCACAGGGTTCACCACAAGTACTCTGACACGACGGCCGACCCACACA 108523 ||||||| | || ||| | || || ||||||| |||||| || || |||||||||| Sbjct 18731233 AGTGGGTCCGGGACCACCGTGTGCATCACAAGTTCTCTGAAACAGATGCAGACCCACACA 18731292 Query 108524 ACGCCAACAGGGGGTTCTGGTTCTCGCACGTGGGATGGCTCATGATGACCAAGGACCCCG 108583 |||||| |||| |||| ||||| ||| | || ||||| || || |||| |||||| Sbjct 18731293 ACGCCATGCGGGGCTTCTTCTTCTCCCACATTGGCTGGCTGCTGGTGCGCAAGCACCCCG 18731352 Query 108584 ACGTGATCTCGGCCGGTCGAAAAATGGACATGACGGACATA 108624 |||| ||| | || | || ||||| ||| |||||| Sbjct 18731353 ACGTCATCGAGAAGGGACAGAAGCTGGACCTGAGTGACATA 18731393 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381762093778344