Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Passer_20domesticus_20[genbank_20GCA_5F001700915.1_202016-08-31] 2,301 sequences; 1,042,720,703 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq108 96.9 3e-15 seq10 96.9 3e-15 >seq108 Length=148376 Score = 96.9 bits (106), Expect = 3e-15 Identities = 89/113 (79%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 153640 TGTACTGCACGATCTCGGCGCAGAGGTTGCTGCATTTTATGACGCCCAAATTTTGCTGAT 153699 |||||| ||||||||||| ||| ||||||||||| || ||| ||||| || ||||| | Sbjct 54054 TGTACTCCACGATCTCGGTGCACAGGTTGCTGCACTTGATGGTGCCCAGGTTCTGCTGGT 54113 Query 153700 TGCTTTTGCGATTGCACGCGTCTTTGAAGAGCATGTACGGTCCGCCGGTCTCG 153752 |||| || | ||||| | ||| ||| |||||||||| || ||| |||||| Sbjct 54114 TGCTCTTCCTGTTGCAGGAGTCCTTGTAGAGCATGTAGGGGGTGCCAGTCTCG 54166 Score = 95.1 bits (104), Expect = 1e-14 Identities = 112/152 (74%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 153301 GGGCCAGTTCGCAGCTAGCCTCGAGCGCGCCATAGTATATGGTTTCGGCGATTTGTTTAT 153360 ||||||| |||||||| ||||| || || || ||||| ||||| ||| ||| || | | Sbjct 51572 GGGCCAGCTCGCAGCTGGCCTCCAGGGCCCCGTAGTAGATGGTCTCGAAGATGTGCTGGT 51631 Query 153361 TGAGAACGGCCGCTTCTTCGCTCTCGTACGGCATGCGCAGCAGCACAAAGGCGTCGGCCA 153420 |||| ||| || |||||||| | || | |||| || | ||||||||||||| Sbjct 51632 TGAGGCGCTGCGCCTCGGCGCTCTCGAAGGGGAACCGCATGAGGATGAAGGCGTCGGCCA 51691 Query 153421 GACCCTGGATACCGACGCCGATGGGTCGATGC 153452 | ||||| | |||| ||||||||| || ||| Sbjct 51692 GGCCCTGCACGCCGATGCCGATGGGCCGGTGC 51723 >seq10 Length=11116859 Score = 96.9 bits (106), Expect = 3e-15 Identities = 139/196 (71%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 138419 TTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGG 138478 ||||||| || || |||||||||||| || || ||| |||||| || || || || | Sbjct 3464538 TTGACTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCGTCCTCCAGCTGCTTCCCTG 3464597 Query 138479 AATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA 138538 | |||| || | ||| ||||| ||||| || ||||| || || ||| || || | Sbjct 3464598 CAAAGATCAGCCTCTGCTGGTCAGGAGGAATGCCTTCCTTATCCTGGATCTTGGCCTTCA 3464657 Query 138539 ATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 138598 | || | |||||| | | ||||||||||| || | || || |||||||| || | Sbjct 3464658 CGTTCTCAATGGTGTCACTGGGCTCCACCTCGAGGGTGATGGTCTTGCCAGTCAGGGTCT 3464717 Query 138599 TTACAAAAATCTGCAT 138614 | || || |||||||| Sbjct 3464718 TCACGAAGATCTGCAT 3464733 Score = 93.3 bits (102), Expect = 4e-14 Identities = 137/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 || ||||| || ||||||||||| | || ||| |||||| || || || || | | Sbjct 3464996 GATTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGCCCGTCCTCCAGCTGCTTCCCTGCA 3465055 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| || | ||| ||||| ||||| |||||||| ||||| ||| || || | Sbjct 3465056 AAGATCAGCCTCTGCTGGTCAGGAGGGATACCTTCCTTGTCCTGGATCTTGGCCTTGACA 3465115 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | |||||| | | ||||||||||| || | || || |||||||| || || Sbjct 3465116 TTCTCAATGGTGTCACTGGGCTCCACCTCGAGGGTGATGGTCTTGCCAGTCAGGGTCTTC 3465175 Query 138601 ACAAAAATCTGCAT 138614 || || |||||||| Sbjct 3465176 ACGAAGATCTGCAT 3465189 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496248126252720