Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Passer_20domesticus_20[genbank_20GCA_5F001700915.1_202016-08-31] 2,301 sequences; 1,042,720,703 total letters Query= NC_012783.2 Length=226205 Score E Sequences producing significant alignments: (Bits) Value seq27 176 7e-39 seq8 122 1e-22 >seq27 Length=49693984 Score = 176 bits (194), Expect = 7e-39 Identities = 219/300 (73%), Gaps = 0/300 (0%) Strand=Plus/Minus Query 8880 GGAACGCGGCCAACGGACATCCCTTCACATTGGCACAAATGAGGGACTGAATGGTTGCGG 8939 |||| || | || ||||| ||||| || ||| || ||||| ||| | || || | Sbjct 22296659 GGAAGGCAGTGAAGGGACAGCCCTTGACGTTGTTGCAGATGAGCTTCTGCAGGGAGGCCG 22296600 Query 8940 TTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGGG 8999 | || |||||||| || || || | || |||||||||||||| ||||||||| | |||| Sbjct 22296599 TGTTGACGATGTCGAAGCCCACCTTGCCCCCGAAGGTGCTGGGCTTCCAGTACTCAGGGG 22296540 Query 9000 AGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATGATGC 9059 |||||||| |||| |||| ||||| |||| ||| || |||||||||| ||| | ||| Sbjct 22296539 AGCAGATGGCGTTGCCCATCAGCCCCTTCAGGGAGAAGGGAGCCCCCATCTCCACCATGG 22296480 Query 9060 TCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGTTCGA 9119 |||| || |||||||| ||||| || || || || || | | ||| | ||| || || | Sbjct 22296479 TCTCGCCAAAGATGGCCCCGGGCCGGGGCTTCTCCACCAGCAGGCCTGGGTACAGCTCCA 22296420 Query 9120 CAGCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCACCTACAA 9179 || || | ||| || || || | |||| ||| || || ||||| || || ||| ||| Sbjct 22296419 TGGCATCAATGTCCCCGTACAGCTCCTCCAGCTCCGCTGCCATCTCTTTTTCTCCTGCAA 22296360 Score = 152 bits (168), Expect = 7e-32 Identities = 171/229 (75%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 9730 AGACGAGTGGTTTGAAACAACTGCTCGTCACCCCATTCCGGGTGTTCGTGTTTGAGAACA 9789 || || | ||| || || | ||||||||| |||| || ||||| | ||| ||||| || Sbjct 22294713 AGCCGGGCGGTCTGGAAGAGCTGCTCGTCGTCCCACTCGGGGTGCTGGTGCTTGAGCACG 22294654 Query 9790 TCGCAGACCCTGTTGTGTTCTCTCAGCCATATGGTGGCGTACATCATTAAACCCGGCACT 9849 |||||||| | |||||| || | |||||| ||||||||||||||||| | |||||||| Sbjct 22294653 TCGCAGACGCGGTTGTGCTCGCGCAGCCAGATGGTGGCGTACATCATCAGCCCCGGCACC 22294594 Query 9850 AAACCAAACACTTCATTCCCCACTGCAAAGCGCAGATCATCGGGCACTTCGGGCGCATAC 9909 | || ||||| || | |||||| | || ||||| | |||||||| | ||||| ||| Sbjct 22294593 AGCCCGAACACCTCCTGCCCCACGGAGAACCGCAGGTGCTCGGGCACGTGGGGCGGGTAC 22294534 Query 9910 AGCATATGCACCTGGGTCTCTTTGACGGTGGGGGGATACATTTCACCGT 9958 ||||| | |||| || || || || || || |||||||| |||| Sbjct 22294533 AGCATCTCTGCCTGCGTGTCCCGCACCGTCGGCGGGTACATTTCTCCGT 22294485 Score = 123 bits (136), Expect = 4e-23 Identities = 172/239 (72%), Gaps = 4/239 (2%) Strand=Plus/Minus Query 9453 GAACGATTCAACTAATTGGGCTATTCCGTGCTTGATGAGGATGGAATTGTTGTAAACGAA 9512 ||| |||| || | |||| || ||| |||| | | |||||| |||||||| | ||| Sbjct 22295894 GAAAGATTTGACCATATGGGATAGTCCATGCTCCAGCATGATGGAGTTGTTGTAGAGGAA 22295835 Query 9513 GTGTTCGTAACCATACTTCGCGTCGCCTATGCGAAAATCATCAGGCAACAGAGAATGCCA 9572 || | | | |||| | |||| || | || |||||||| ||| | ||||| Sbjct 22295834 CTGCTGGAAGGTGTACTCCTGGTCGTGGATCTGGAAGGTATCAGGCAGCAGCGGGTGCCA 22295775 Query 9573 GCGGTAGAGGGTATTGAACTCGGCCGCTATTCGGTTCTGGTACTGAAA--GGCGGTACCG 9630 | |||| ||||| ||||||||||| || || |||||||||||||| || ||| | Sbjct 22295774 GTGGTACAGGGTGTTGAACTCGGCTGCGATGCGGTTCTGGTACTGGAACCTCTGGT--TG 22295717 Query 9631 AACAGTAACTCCGGGTCAAAGATTAGCTGGAAGTGGTACCCGCTGAGTTGCTGGACATA 9689 ||||| | ||| |||||||| | |||| |||||||||||| || || ||||| ||||| Sbjct 22295716 AACAGCAGCTCAGGGTCAAACTTCAGCTTGAAGTGGTACCCACTCAGGTGCTGCACATA 22295658 >seq8 Length=11241730 Score = 122 bits (134), Expect = 1e-22 Identities = 214/312 (69%), Gaps = 0/312 (0%) Strand=Plus/Plus Query 8867 GCGTTGGAAACTCGGAACGCGGCCAACGGACATCCCTTCACATTGGCACAAATGAGGGAC 8926 |||| || || ||||||| | |||| || |||||| ||| || | ||| | Sbjct 2353894 GCGTCGGGCACGTGGAACGCCACGTACGGGCACTTCTTCACGTTGAGGCACACGAGCTTC 2353953 Query 8927 TGAATGGTTGCGGTTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTC 8986 | | || || || |||||||| || || || | || || || || ||||||||| Sbjct 2353954 TCGAGGGACGCCGTCTTCACGATCTCAAAGCCAGTTGCTCCACCAAATGTACTGGGTTTC 2354013 Query 8987 CAGTACGCCGGGGAGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCC 9046 |||||| | |||||||||||| || | | ||||| |||| |||||| ||||| || Sbjct 2354014 CAGTACTCTGGGGAGCAGATGGGATTGCCAAAAAGCCCCTTCAGGGAAAATGGAGCTCCG 2354073 Query 9047 AGCTCGATGATGCTCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCA 9106 | ||| | ||||| || || || ||| || ||| | |||||||| | | ||||| Sbjct 2354074 ATCTCCACCATGCTTTCCCCAAAAATGCCATTGGGTTGGGGTTTTTCCAGCAGCAAGCCT 2354133 Query 9107 GTGTAGAGTTCGACAGCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCC 9166 | ||| | || | ||| || | ||| ||||| || |||||| ||| || ||| |||| Sbjct 2354134 GGGTAAAACTCCAGAGCATCAATGTCTCCATACAGCTCTTCCAGCTCCGCTGCTTTCTCT 2354193 Query 9167 TTCTCACCTACA 9178 | ||| ||| || Sbjct 2354194 TCCTCTCCTGCA 2354205 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 723707183773400